Typestate pattern for the Run.

Fix #12, see excel sheet for data about resources `ecdna-resources.xlsx` Histogram for the ecDNA distribution that is `u16` Subsampling.
fraterenz · Feb 23, 2022 · 8827f45 · 8827f45
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diff --git a/CHANGELOG.md b/CHANGELOG.md
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+# Changelog
+## 0.1.1
+### Added
+The ecDNA distribution is a vector of `u16`
+The ecDNA distribution is a vector where each entries is a cell and the content is the number of ecDNA copies the cell has.
+The ecDNA distribution is saved as a JSON, i.e. as a mapping where the keys are the ecDNA copies and the entries are the number of cells for each key (histogram).
+Implement the [state pattern](https://doc.rust-lang.org/book/ch17-03-oo-design-patterns.html) to pass the ecDNA distribution by consuming the `Run` instead of deep copy.
+Introduce subsampling: run the simulations for a number of cells, then run ABC with 100 subsamples for each run. In the end, the number of tested simulations will be 100 * the number of runs.
+
+### Fixed
+Fix bug in the computation of the ks distance.