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Issues list

Somatic and germline CNV calling from WGS data
#932 opened Dec 10, 2024 by anitha-ravichandran
2
cnvkit result start position is always 0. What might be the reason?
#931 opened Dec 6, 2024 by altayg
module 'pysam' has no attribute 'AlignmentHeader'
#930 opened Nov 27, 2024 by yyy990
CNVkit - ImportError: cannot import name 'Int64Index' from 'pandas'
#929 opened Nov 25, 2024 by pvvhoang
1
about access file
#927 opened Nov 15, 2024 by HuZhuocheng
Question: may I use single-cell sequencing data to make a "pesudo normal sample reference"? question
#925 opened Oct 23, 2024 by SenLiBio
2
Softening the dependency on PySAM enhancement
#924 opened Oct 20, 2024 by ilykos
Different behaviour scatter shell shorthand question
#923 opened Oct 18, 2024 by lvree
2
Seperate Log2 ratio question
#922 opened Oct 15, 2024 by pcr876
1
Interpreting the results question
#921 opened Oct 15, 2024 by MaryGoAround
1
Can I get compy number between white blood cell bam and adjacent normal tissue bam question
#919 opened Oct 3, 2024 by shenhaizhongdechanrao
1
What affects the detection of CNVs？ question
#917 opened Sep 26, 2024 by fjptwenger
1
cnvkit.py batch with custom pon early exit 0
#916 opened Sep 24, 2024 by oronoc1210
2
auto gender detection assignment for reference creation problem
#915 opened Sep 24, 2024 by duartemolha
cnvkit.py coverage does not honor -q option
#913 opened Sep 13, 2024 by ishida-md
5
targeted DNA seq
#908 opened Aug 28, 2024 by MaryGoAround
1
call with filters cn, ci, sem
#906 opened Aug 14, 2024 by gevro
2
segment with cbs method - threshold
#905 opened Aug 13, 2024 by gevro
Possible bug in bin sizes
#904 opened Aug 11, 2024 by gevro
access command: recommended -s (mingap) value
#902 opened Aug 8, 2024 by gevro
CNVkit segment command RuntimeError: Subprocess command failed
#901 opened Jul 31, 2024 by tanbiswas
5
cnvkit.py segment error
#900 opened Jul 25, 2024 by l0ka
Unable to load BED file with skgenome
#899 opened Jul 19, 2024 by EfraMP
Installation problems
#898 opened Jul 18, 2024 by EfraMP
6
Somatic CNV calling in case of pre-existing CNVs
#897 opened Jul 15, 2024 by HenriettaHolze
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