v0.1.8

Full Changelog: v0.1.7...v0.1.8

Commits:

• Added tests for smoothing algorithm
• DALL-E Acknowledgement
• Minor fix to progress bar
• Implemented algorithm for smoothing gene expression based on KNNs
• Uses nanpercentile instead of percentile
• Fixed exclude_zero & added trimean threshold

v0.1.7

Full Changelog: v0.1.6...v0.1.7

• Added Trimean as central tendency measure for aggregating expression values (gene expression, reaction activity, metabolic task activity, etc).
• If the reaction activity is 0, the first gene found with that value will be assigned as the determinant gene

v0.1.6

Full Changelog: v0.1.5...v0.1.6

• Added small code optimizations to handle GPRs.
• Expanded verbose and progress bar options for handling chunks of data

v0.1.5

Full Changelog: v0.1.4...v0.1.5

Added functions to save and load scCellFie results in AnnData object and fixed minor bugs of manipulating adata.X arrays.

v0.1.4

Full Changelog: v0.1.3...v0.1.4

Fixed minor bug

v0.1.3

Implemented functions in sccellfie.spatial

Full Changelog: v0.1.2...v0.1.3

v0.1.2

Optimized reaction_activity.py and put placeholder for spatial analyses.

Full Changelog: v0.1.1...v0.1.2

v0.1.1

Added new functions and testing.

v0.1.0

First publication on PYPI