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1. Microbiome-Factorization Microbiome-Factorization Public

   Examples of using PhyloFactor and DEICODE to analyze microbiome datasets.

   Jupyter Notebook 1 1

2. saezlab/ccc_protocols saezlab/ccc_protocols Public

   LIANA x Tensor-cell2cell Protocols

   Jupyter Notebook 1 3

3. LewisLabUCSD/Ligand-Receptor-Pairs LewisLabUCSD/Ligand-Receptor-Pairs Public

   Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.

   129 34

4. LewisLabUCSD/Celegans-cell2cell LewisLabUCSD/Celegans-cell2cell Public

   Analyses for cell-cell interactions in C. elegans

   Jupyter Notebook 6 2

5. cell2cell cell2cell Public

   User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

   Python 59 17

6. scCellFie scCellFie Public

   scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.

   Python 3