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codespell: tuneup of config and some new typos detected fixes #1334
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@@ -3,7 +3,7 @@ | |||
"schemaKey": "Dandiset", | |||
"schemaVersion": "0.4.0", | |||
"name": "A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task", | |||
"description": "A challenge for data sharing in systems neuroscience is the multitude of different data formats used. Neurodata Without Borders: Neurophysiology 2.0 (NWB:N) has emerged as a standardized data format for the storage of cellular-level data together with meta-data, stimulus information, and behavior. A key next step to facilitate NWB:N adoption is to provide easy to use processing pipelines to import/export data from/to NWB:N. Here, we present a NWB-formatted dataset of 1863 single neurons recorded from the medial temporal lobes of 59 human subjects undergoing intracranial monitoring while they performed a recognition memory task. We provide code to analyze and export/import stimuli, behavior, and electrophysiological recordings to/from NWB in both MATLAB and Python. The data files are NWB:N compliant, which affords interoperability between programming languages and operating systems. This combined data and code release is a case study for how to utilize NWB:N for human single-neuron recordings and enables easy re-use of this hard-to-obtain data for both teaching and research on the mechanisms of human memory.", | |||
"description": "A challenge for data sharing in systems neuroscience is the multitude of different data formats used. Neurodata Without Borders: Neurophysiology 2.0 (NWB:N) has emerged as a standardized data format for the storage of cellular-level data together with meta-data, stimulus information, and behavior. A key next step to facilitate NWB:N adoption is to provide easy to use processing pipelines to import/export data from/to NWB:N. Here, we present a NWB-formatted dataset of 1863 single neurons recorded from the medial temporal lobes of 59 human subjects undergoing intracranial monitoring while they performed a recognition memory task. We provide code to analyze and export/import stimuli, behavior, and electrophysiological recordings to/from NWB in both MATLAB and Python. The data files are NWB:N compliant, which affords interoperability between programming languages and operating systems. This combined data and code release is a case study for how to utilize NWB:N for human single-neuron recordings and enables easy reuse of this hard-to-obtain data for both teaching and research on the mechanisms of human memory.", | |||
"contributor": [ |
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type checking issues is most likely unrelated and due to newer versions of requests or smth like thattyping: aiohttp==3.8.6,aiosignal==1.3.1,anys==0.3.0,appdirs==1.4.4,arrow==1.3.0,asciitree==0.3.3,async-timeout==4.0.3,attrs==23.1.0,bidsschematools==0.7.2,blessed==1.20.0,boto3==1.28.63,botocore==1.31.63,certifi==2023.7.22,cffi==1.16.0,charset-normalizer==3.3.0,ci-info==0.3.0,citeproc-py==0.6.0,click==8.1.7,click-didyoumean==0.3.0,coverage==7.3.2,cryptography==41.0.4,dandi @ file:///home/runner/work/dandi-cli/dandi-cli/.tox/.tmp/package/1/dandi-0.56.2%2B2.g58b61f7.tar.gz#sha256=de62a81650d229567edca201ff48e7a50cea1177498a9ca16ffda494081951a0,dandischema==0.8.4,dnspython==2.4.2,duecredit==0.9.2,email-validator==2.0.0.post2,etelemetry==0.3.1,exceptiongroup==1.1.3,fasteners==0.19,fqdn==1.5.1,frozenlist==1.4.0,fscacher==0.4.0,fsspec==2023.9.2,h5py==3.10.0,hdmf==3.10.0,humanize==4.8.0,idna==3.4,importlib-metadata==6.8.0,importlib-resources==6.1.0,iniconfig==2.0.0,interleave==0.2.1,isodate==0.6.1,isoduration==20.11.0,jaraco.classes==3.3.0,jeepney==0.8.0,jmespath==1.0.1,joblib==1.3.2,jsonpointer==2.4,jsonschema==4.19.1,jsonschema-specifications==2023.7.1,keyring==24.2.0,keyrings.alt==5.0.0,lxml==4.9.3,more-itertools==10.1.0,multidict==6.0.4,mypy==1.6.0,mypy-extensions==1.0.0,natsort==8.4.0,numcodecs==0.12.0,numpy==1.24.4,nwbinspector==0.4.30,opencv-python==4.8.1.78,packaging==23.2,pandas==2.0.3,pip==23.2.1,pkgutil_resolve_name==1.3.10,pluggy==1.3.0,pycparser==2.21,pycryptodomex==3.19.0,pydantic==1.10.13,pynwb==2.5.0,pyout==0.7.3,pytest==7.4.2,pytest-cov==4.1.0,pytest-mock==3.11.1,pytest-rerunfailures==12.0,python-dateutil==2.8.2,pytz==2023.3.post1,PyYAML==6.0.1,referencing==0.30.2,requests==2.31.0,responses==0.23.3,rfc3339-validator==0.1.4,rfc3987==1.3.8,rpds-py==0.10.6,ruamel.yaml==0.17.35,ruamel.yaml.clib==0.2.8,s3fs==0.4.2,s3transfer==0.7.0,scipy==1.10.1,SecretStorage==3.3.3,semantic-version==2.10.0,setuptools==68.2.0,six==1.16.0,tenacity==8.2.3,tomli==2.0.1,tqdm==4.66.1,types-appdirs==1.4.3.5,types-python-dateutil==2.8.19.14,types-PyYAML==6.0.12.12,types-requests==2.31.0.9,typing_extensions==4.8.0,tzdata==2023.3,uri-template==1.3.0,urllib3==1.26.17,vcrpy==5.1.0,wcwidth==0.2.8,webcolors==1.13,wheel==0.41.2,wrapt==1.15.0,yarl==1.9.2,zarr==2.16.1,zarr-checksum==0.2.9,zipp==3.17.0
typing: commands[0]> mypy dandi
dandi/dandiapi.py:[25](https://github.com/dandi/dandi-cli/actions/runs/6534602041/job/17742171073?pr=1334#step:5:26)1: error: Item "None" of "Optional[Response]" has no
attribute "status_code" [union-attr]
e.response.status_code,
^~~~~~~~~~~~~~~~~~~~~~
dandi/dandiapi.py:254: error: Item "None" of "Optional[Response]" has no
attribute "text" [union-attr]
e.response.text,
^~~~~~~~~~~~~~~
dandi/files/bases.py:365: error: Item "None" of "Optional[Response]" has no
attribute "status_code" [union-attr]
if e.response.status_code == 409:
^~~~~~~~~~~~~~~~~~~~~~
dandi/files/bases.py:367: error: Item "None" of "Optional[Response]" has no
attribute "headers" [union-attr]
blob_id = e.response.headers["Location"]
^~~~~~~~~~~~~~~~~~
dandi/files/zarr.py:302: error: Item "None" of "Optional[Response]" has no
attribute "text" [union-attr]
if "Zarr already exists" in e.response.text:
^~~~~~~~~~~~~~~
dandi/dandiarchive.py:168: error: Item "None" of "Optional[Response]" has no
attribute "status_code" [union-attr]
if e.response.status_code == 401 and authenticate is n...
^~~~~~~~~~~~~~~~~~~~~~
dandi/dandiarchive.py:[29](https://github.com/dandi/dandi-cli/actions/runs/6534602041/job/17742171073?pr=1334#step:5:30)6: error: Item "None" of "Optional[Response]" has no
attribute "status_code" [union-attr]
if e.response.status_code == 401 and authenticate is n...
^~~~~~~~~~~~~~~~~~~~~~
dandi/download.py:703: error: Item "None" of "Optional[Response]" has no
attribute "status_code" [union-attr]
if attempt >= 2 or exc.response.status_code not in (
^~~~~~~~~~~~~~~~~~~~~~~~
Found 8 errors in 5 files (checked 78 source files) |
Codecov ReportAll modified lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## master #1334 +/- ##
==========================================
- Coverage 88.81% 88.78% -0.03%
==========================================
Files 76 76
Lines 10216 10216
==========================================
- Hits 9073 9070 -3
- Misses 1143 1146 +3
Flags with carried forward coverage won't be shown. Click here to find out more. ☔ View full report in Codecov by Sentry. |
🚀 PR was released in |
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