mypy config: Don't ignore missing imports

dandi/cli/__init__.py

@@ -12,7 +12,7 @@
     # A trick found on https://github.com/h5py/h5py/issues/1079#issuecomment-567081386
     # to avoid some weird behavior on Yarik's laptop where MPI fails to initialize
     # and that takes h5py additional 5 seconds to import
-    import mpi4py
+    import mpi4py  # type: ignore[import-not-found]
 
     mpi4py.rc(initialize=False)
 except Exception:

dandi/utils.py

@@ -89,7 +89,7 @@ def _pdb_excepthook(
             pdb.post_mortem(tb)
 
     if ipython:
-        from IPython.core import ultratb
+        from IPython.core import ultratb  # type: ignore[import]
 
         sys.excepthook = ultratb.FormattedTB(
             mode="Verbose",

setup.cfg

@@ -138,7 +138,7 @@ exclude-file = .codespellignore
 #allow_untyped_defs = False
 implicit_reexport = False
 allow_incomplete_defs = False
-ignore_missing_imports = True
+ignore_missing_imports = False
 no_implicit_optional = True
 local_partial_types = True
 pretty = True
@@ -151,12 +151,82 @@ warn_unreachable = True
 plugins = pydantic.mypy
 exclude = _version\.py|due\.py
 
+[mypy-dandi.*]
+ignore_missing_imports = True
+
 [mypy-dandi._version]
 follow_imports = skip
 
 [mypy-dandi.due]
 follow_imports = skip
 
+[mypy-bidsschematools.*]
+# <https://github.com/bids-standard/bids-specification/issues/1484>
+ignore_missing_imports = True
+
+[mypy-click_didyoumean.*]
+# <https://github.com/click-contrib/click-didyoumean/issues/16>
+ignore_missing_imports = True
+
+[mypy-etelemetry.*]
+# <https://github.com/sensein/etelemetry-client/issues/53>
+ignore_missing_imports = True
+
+[mypy-fasteners.*]
+# <https://github.com/harlowja/fasteners/issues/111>
+ignore_missing_imports = True
+
+[mypy-fscacher.*]
+ignore_missing_imports = True
+
+[mypy-fsspec.*]
+# <https://github.com/fsspec/filesystem_spec/issues/625>
+ignore_missing_imports = True
+
+[mypy-joblib.*]
+# <https://github.com/joblib/joblib/issues/1516>
+ignore_missing_imports = True
+
+[mypy-h5py.*]
+# <https://github.com/h5py/h5py/issues/1912>
+ignore_missing_imports = True
+
+[mypy-hdmf.*]
+# <https://github.com/hdmf-dev/hdmf/issues/994>
+ignore_missing_imports = True
+
+[mypy-keyrings.alt.*]
+# <https://github.com/jaraco/keyrings.alt/issues/52>
+ignore_missing_imports = True
+
+[mypy-nwbinspector.*]
+# <https://github.com/NeurodataWithoutBorders/nwbinspector/issues/416>
+ignore_missing_imports = True
+
+[mypy-pynwb.*]
+# <https://github.com/NeurodataWithoutBorders/pynwb/issues/1408>
+ignore_missing_imports = True
+
+[mypy-pyout.*]
+# <https://github.com/pyout/pyout/issues/142>
+ignore_missing_imports = True
+
+[mypy-semantic_version.*]
+# <https://github.com/rbarrois/python-semanticversion/issues/138>
+ignore_missing_imports = True
+
+[mypy-vcr.*]
+# <https://github.com/kevin1024/vcrpy/issues/780>
+ignore_missing_imports = True
+
+[mypy-zarr.*]
+# <https://github.com/zarr-developers/zarr-python/issues/1566>
+ignore_missing_imports = True
+
+[mypy-zarr_checksum.*]
+# <https://github.com/dandi/zarr_checksum/issues/5>
+ignore_missing_imports = True
+
 [pydantic-mypy]
 init_forbid_extra = True
 warn_untypes_fields = True