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HTML 3 Updated May 12, 2022

A translator from Intel SSE intrinsics to Arm/Aarch64 NEON implementation

C++ 1,369 218 Updated Mar 26, 2025

A simple and efficient tool to parallelize Pandas operations on all available CPUs

Python 3,745 214 Updated Jul 9, 2024

A DSL for data-driven computational pipelines

Groovy 2,891 675 Updated Mar 28, 2025

ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.

Rust 22 1 Updated Sep 1, 2021

code and manuscript of "ProSolo: Accurate Variant Calling from Single Cell DNA Sequencing Data"

Python 2 Updated Sep 23, 2021

Official repository for Citation Style Language (CSL) citation styles.

Ruby 3,438 3,851 Updated Mar 22, 2025

This is the development home of the workflow management system Snakemake. For general information, see

Python 2,435 587 Updated Mar 30, 2025

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

Python 316 57 Updated Jun 4, 2018

Vector class library, latest version

C++ 1,350 148 Updated Feb 1, 2024

Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)

77 6 Updated Jun 10, 2022

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,333 1,008 Updated Mar 27, 2025

Data and information about the Polaris study

53 8 Updated Nov 18, 2019

Demographic inference from whole genomes

C++ 11 4 Updated Oct 18, 2022
TeX 53 8 Updated Jun 24, 2020

The next version of bwa-mem

C++ 744 102 Updated Aug 5, 2024

fast log and exp functions for AVX2/AVX-512

Python 227 38 Updated Mar 12, 2025
C++ 25 11 Updated Mar 3, 2020

2 ~ 6 sets venn diagram for python

Python 333 121 Updated May 16, 2024

Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

HTML 31 11 Updated Feb 12, 2022

Statistical data visualization in Python

Python 12,983 1,974 Updated Jan 26, 2025

software tools for haplotype assembly from sequence data

C 217 38 Updated Feb 9, 2025

LaTeX template for an Oxford University thesis

TeX 191 111 Updated Dec 13, 2023

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Java 667 390 Updated Mar 30, 2025

A flexible variational inference LDA library.

C++ 22 6 Updated Mar 15, 2019

A Fast Implementation of Random Forests

C++ 783 196 Updated Mar 1, 2025

Specifications of SAM/BAM and related high-throughput sequencing file formats

TeX 671 176 Updated Mar 25, 2025

scikit-learn: machine learning in Python

Python 61,604 25,730 Updated Mar 30, 2025

mlpack: a fast, header-only C++ machine learning library

C++ 5,308 1,654 Updated Mar 30, 2025

Deep Learning for humans

Python 62,807 19,557 Updated Mar 28, 2025
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