1.11.0

Fixed py4cytoscape_utils node_name_to_node_suid() to allow nodes named by integers instead of alphanumerics

1.10.0

• Added base_url parameter propagation in filters, networks and tables functions
• Add documentation & check for outsize commands_run and commands_get requests
• Speed improvement on functions that convert node or edge names to SUIDs

1.9.0

• Removed value validation warning from set_visual_property_default()
• Fixed missing URL parameter in create_network_from_data_frames() and create_network_from_networkx()
• Added style functions for node_position and node_label_position
• Allowed Cytoscape version check to include patch level (e.g., x.y.patch)
• Added layout functions scale_layout() and rotate_layout() to match Cytoscape's Layout Tools

1.8.0

• Allowed load_table_data() to handle lists containing float, int and bool instead of just str
• Fixed base_url= not recognized for update_style_defaults() and set_visual_property_default()
• Update python-igraph name to igraph
• Clean up property value warnings for set_node_property_bypass() and set_edge_property_bypass()

1.7.0

• Updated annotations.ungroup() to call Cytoscape via GET instead of POST, per document
• Fixed networks.create_network_from_data_frames() to allow key column different than 'id'
• Documented how to include a comma in a node name
• Fixed timing issue in merge_networks() where network wasn't stable before returning

1.6.0

• Now supporting Metascape migration from py2cytoscape to py4cytoscape
• Added sandbox support when Cytoscape is at URL different than 127.0.0.1
• Fixed bugs for calling Cytoscape at URL different than 127.0.0.1
• Removed slow n^2 algorithm from get_table_columns()
• For failed connections to Cytoscape, use exponential backoff retry
• Updated support for Python's improved comparison semantics and treatment of NANs (e.g., style_auto_mappings(), create_column_filter())
• Added Alternate IP Address section to Concepts.rst
• Allow text colors (e.g., "red") in addition to hex colors when setting color properties
• Allow log directory to be set via PY4CYTOSCAPE_DETAIL_LOGGER environment variable
• Allow execution delays to be set via environment variable (PY4CYTOSCAPE_CATCHUP_FILTER_SECS, PY4CYTOSCAPE_MODEL_PROPAGATION_SECS, PY4CYTOSCAPE_CATCHUP_NETWORK_SECS, PY4CYTOSCAPE_CATCHUP_NETWORK_TIMEOUT_SECS)
• Disallow string as value when setting opacity properties
• Added value syntax checks for map_visual_property(), set_node_property_bypass(), set_edge_property_bypass(), set_network_property_bypass(), set_visual_property_default(), update_style_defaults() & set_visual_property_default()
• Added ability to use old property names in all property functions
• Fixed occasional status 404 in cytoscape_api_versions()
• Fixed apps functions to support Cytoscape 3.10 (get_app_information())
• Added set_catchup_network_merge_secs() and PY4CYTOSCAPE_CATCHUP_NETWORK_MERGE_SECS environment variable to control post-merge delay
• Eliminated futures warning for load_table_data() for use of .iteritems()
• Added select_edges_adjacent_to_nodes()

1.5.0

• Removed dependence on Enum package due to build errors

1.4.0

• Supported Metascape migration from py2cytoscape to py4cytoscape
• Added names= to get_network_list
• Added create_cytoscapejs_from_network and create_network_from_cytoscapejs
• Added get_visual_style_JSON
• Added delete_all_visual_styles
• Added sandbox support when Cytoscape is at URL different than 127.0.0.1
• Fixed bugs for calling Cytoscape at URL different than 127.0.0.1

1.3.0

• Improved cloud file download
• Improved support for local Jupyter Notebook execution
• Demonstration of enrichment functionality
• Rationalized tutorials

New annotation and selection functions, local notebook file system access

• Addition of annotation functions (per new Cytoscape features)
• Changed default for sandboxing when running Notebook on local Workstation
• Add new functions: create_view, select_all
• Sped up select_all_nodes, select_all_edges