Tests #978
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| name: Tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| schedule: | |
| - cron: '0 0 * * 0' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| PIP_NO_BINARY: rasterio | |
| DEBIAN_FRONTEND: noninteractive | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| - uses: pre-commit/[email protected] | |
| docker_tests: | |
| needs: linting | |
| runs-on: ubuntu-latest | |
| name: Docker | GDAL=${{ matrix.gdal-version }} | python=${{ matrix.python-version }} | rasterio${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }} | |
| container: ghcr.io/osgeo/gdal:ubuntu-full-${{ matrix.gdal-version }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11'] | |
| rasterio-version: [''] | |
| xarray-version: [''] | |
| pandas-version: [''] | |
| run-with-scipy: ['YES'] | |
| gdal-version: ['3.6.4'] | |
| include: | |
| - python-version: '3.9' | |
| rasterio-version: '' | |
| xarray-version: '==0.17' | |
| pandas-version: '<2' | |
| run-with-scipy: 'YES' | |
| gdal-version: '3.4.3' | |
| - python-version: '3.9' | |
| rasterio-version: '==1.2.1' | |
| xarray-version: '' | |
| pandas-version: '' | |
| run-with-scipy: 'YES' | |
| gdal-version: '3.5.3' | |
| - python-version: '3.9' | |
| rasterio-version: '' | |
| xarray-version: '' | |
| pandas-version: '' | |
| run-with-scipy: 'NO' | |
| gdal-version: '3.5.3' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Remove unused apt repo | |
| if: ${{ matrix.gdal-version }} == '3.5.3' | |
| run: | | |
| rm -f /etc/apt/sources.list.d/apache-arrow.sources | |
| - name: Update | |
| run: | | |
| apt-get update | |
| apt-get -y install software-properties-common | |
| add-apt-repository -y ppa:deadsnakes/ppa | |
| apt-get update | |
| - name: Set up Python ${{ matrix.python-version }} | |
| run: | | |
| apt-get install -y --no-install-recommends \ | |
| python${{ matrix.python-version }} \ | |
| python${{ matrix.python-version }}-dev \ | |
| python${{ matrix.python-version }}-venv \ | |
| python3-pip \ | |
| g++ | |
| chown -R $(whoami) /github/home/ | |
| - name: Install dependencies | |
| run: | | |
| python${{ matrix.python-version }} -m venv testenv | |
| . testenv/bin/activate | |
| python -m pip install --upgrade pip | |
| export INSTALL_DEPS='rasterio${{ matrix.rasterio-version }} xarray${{ matrix.xarray-version }} pandas${{ matrix.pandas-version }}' | |
| [ "${{ matrix.run-with-scipy }}" = "YES" ] && export INSTALL_DEPS="${INSTALL_DEPS} scipy" | |
| python -m pip install $INSTALL_DEPS | |
| python -m pip install -e .[dev,doc] | |
| - name: run tests | |
| run: | | |
| . testenv/bin/activate | |
| python -m pytest --cov-report term-missing --cov=rioxarray --cov-report xml | |
| - uses: codecov/codecov-action@v3 | |
| conda_test: | |
| needs: linting | |
| name: ${{ matrix.os }} | ${{ matrix.python-version }} | rasterio-${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.9', '3.10', '3.11'] | |
| rasterio-version: ['*'] | |
| xarray-version: ['*'] | |
| run-with-scipy: ['YES'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Conda | |
| uses: s-weigand/setup-conda@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| conda-channels: conda-forge | |
| - name: Install Env | |
| shell: bash | |
| run: | | |
| conda config --prepend channels conda-forge | |
| conda config --set channel_priority strict | |
| export INSTALL_DEPS='python=${{ matrix.python-version }} rasterio=${{ matrix.rasterio-version }} xarray=${{ matrix.xarray-version }} pyproj netcdf4 dask pandoc' | |
| [ "${{ matrix.run-with-scipy }}" = "YES" ] && export INSTALL_DEPS="${INSTALL_DEPS} scipy" | |
| conda create -n test $INSTALL_DEPS | |
| source activate test | |
| python -m pip install -e .[dev,doc] | |
| - name: Check and Log Environment | |
| shell: bash | |
| run: | | |
| source activate test | |
| python -V | |
| python -c "import rioxarray; rioxarray.show_versions();" | |
| conda info | |
| - name: pylint | |
| if: matrix.python-version == '3.9' | |
| shell: bash | |
| run: | | |
| source activate test | |
| pylint rioxarray/ | |
| - name: mypy | |
| shell: bash | |
| if: matrix.python-version == '3.9' | |
| run: | | |
| source activate test | |
| mypy rioxarray/ | |
| - name: Test | |
| shell: bash | |
| run: | | |
| source activate test | |
| pytest --cov-report term-missing --cov=rioxarray --cov-report xml | |
| - name: Test Build docs | |
| shell: bash | |
| if: contains(matrix.os, 'ubuntu') | |
| run: | | |
| source activate test | |
| sphinx-build -b html docs/ docs/_build/ | |
| - uses: codecov/codecov-action@v3 | |
| test_latest: | |
| needs: linting | |
| name: Test latest dependencies | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Conda | |
| uses: s-weigand/setup-conda@v1 | |
| with: | |
| python-version: 3.9 | |
| conda-channels: conda-forge | |
| - name: Install Env | |
| shell: bash | |
| run: | | |
| conda config --prepend channels conda-forge | |
| conda config --set channel_priority strict | |
| conda create -n test python=3.9 proj libgdal cython netcdf4 | |
| source activate test | |
| python -m pip install \ | |
| --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple \ | |
| --no-deps --pre --upgrade \ | |
| numpy \ | |
| pandas \ | |
| scipy; | |
| python -m pip install --upgrade \ | |
| git+https://github.com/dask/dask.git@main \ | |
| git+https://github.com/dask/distributed.git@main \ | |
| git+https://github.com/mapbox/rasterio.git@main \ | |
| git+https://github.com/pyproj4/pyproj.git@main \ | |
| git+https://github.com/pydata/xarray.git@main; | |
| python -m pip install -e .[all] | |
| - name: Check and Log Environment | |
| shell: bash | |
| run: | | |
| source activate test | |
| python -V | |
| python -c "import rioxarray; rioxarray.show_versions();" | |
| conda info | |
| - name: Test | |
| shell: bash | |
| run: | | |
| source activate test | |
| pytest --cov-report term-missing --cov=rioxarray --cov-report xml |