version 1.3.0

[cleder]

User description

• add Python 3.13 to supported versions
• remove maybe_valid methods
• GeoType and GeoCollectionType protocols to use a property instead of an attribute

---

Type

Enhancement, Bug fix

---

Description

• Major refactor in geometry.py including the removal of maybe_valid methods from the LineString, LinearRing, and Polygon classes, and an update to the is_empty method of the LineString class.
• Updated GeoType and GeoCollectionType protocols in types.py to use a property instead of an attribute for __geo_interface__.
• Updated several GitHub Actions workflows and pre-commit hooks to newer versions.
• Added badges for the latest version, license, and downloads to README.rst, and updated the link to the tests directory.
• Updated pyproject.toml with a new classifier and configuration for the ruff tool.
• Added a new GitHub Actions workflow for the PR Agent.
• Added a new section for the unreleased version 1.3.0 in HISTORY.rst.

---

Changes walkthrough

	Relevant files
Bug fix	1 files geometry.py Major refactor in geometry.py                                                                        pygeoif/geometry.py Updated the copyright year. - Removed the maybe_valid methods from the LineString, LinearRing, <br> and <br> ``Polygon classes. - Updated the is_empty method of the LineString class to consider a LineString with no points as empty. - Removed the _check_interior_bounds method from the Polygon class. - Added newlines for better code readability.
Enhancement	1 files types.py Updated GeoType and GeoCollectionType protocols                                    pygeoif/types.py Changed __geo_interface__ from an attribute to a property in GeoType and GeoCollectionType protocols.
Configuration changes	5 files run-all-tests.yml Updated GitHub Actions workflows                                                                  .github/workflows/run-all-tests.yml Updated the version of actions/setup-python from v4 to v5. - Updated the version of codecov/codecov-action from v3 to v4. .pre-commit-config.yaml Updated pre-commit hooks versions                                                                .pre-commit-config.yaml Updated the versions of several pre-commit hooks. codeql-analysis.yml Updated CodeQL Analysis GitHub Action                                                        .github/workflows/codeql-analysis.yml Updated the version of github/codeql-action from v2 to v3. pyproject.toml Updated pyproject.toml with new classifier and ruff configuration pyproject.toml Added "Typing :: Typed" to the classifiers. - Updated the configuration for the ruff tool. pr_agent.yml Added PR Agent GitHub Actions workflow                                                      .github/workflows/pr_agent.yml Added a new GitHub Actions workflow for the PR Agent.
Documentation	2 files README.rst Updated README with badges and correct link                                            README.rst Added badges for the latest version, license, and downloads. - Updated the link to the tests directory. HISTORY.rst Updated HISTORY.rst with new version section                                          docs/HISTORY.rst Added a new section for the unreleased version 1.3.0.

---

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Overview:
The describe tool scans the PR code changes, and generates a description for the PR - title, type, summary, walkthrough and labels. The tool can be triggered automatically every time a new PR is opened, or can be invoked manually by commenting on a PR.

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Utilizing extra instructions The describe tool can be configured with extra instructions, to guide the model to a feedback tailored to the needs of your project. Be specific, clear, and concise in the instructions. With extra instructions, you are the prompter. Notice that the general structure of the description is fixed, and cannot be changed. Extra instructions can change the content or style of each sub-section of the PR description. Examples for extra instructions: [pr_description] extra_instructions=""" - The PR title should be in the format: '<PR type>: <title>' - The title should be short and concise (up to 10 words) - ... """ Use triple quotes to write multi-line instructions. Use bullet points to make the instructions more readable.

More PR-Agent commands To invoke the PR-Agent, add a comment using one of the following commands: /review: Request a review of your Pull Request. /describe: Update the PR title and description based on the contents of the PR. /improve [--extended]: Suggest code improvements. Extended mode provides a higher quality feedback. /ask <QUESTION>: Ask a question about the PR. /update_changelog: Update the changelog based on the PR's contents. /add_docs 💎: Generate docstring for new components introduced in the PR. /generate_labels 💎: Generate labels for the PR based on the PR's contents. /analyze 💎: Automatically analyzes the PR, and presents changes walkthrough for each component. See the tools guide for more details. To list the possible configuration parameters, add a /config comment.

See the describe usage page for a comprehensive guide on using this tool.

[codiumai-pr-agent-free]

PR Description updated to latest commit (29094d3)

[sourcery-ai]

PR Type: Enhancement

PR Summary: This pull request introduces several enhancements and updates to the library. It adds support for Python 3.13, indicating forward compatibility with newer Python versions. The removal of the maybe_valid methods from various geometry classes simplifies the API by removing these preliminary validation checks. Additionally, the PR updates the GeoType and GeoCollectionType protocols to use properties instead of direct attribute access for the __geo_interface__, aligning with Python's property usage for better encapsulation and potentially lazy evaluation.

Decision: Comment

📝 Type: 'Enhancement' - not supported yet.

• Sourcery currently only approves 'Typo fix' PRs.

✅ Issue addressed: this change correctly addresses the issue or implements the desired feature.

No details provided.

📝 Complexity: the changes are too large or complex for Sourcery to approve.

• Unsupported files: the diff contains files that Sourcery does not currently support during reviews.

General suggestions:

• Ensure that the removal of maybe_valid methods is clearly communicated in the release notes or documentation, as this could affect users' existing validation workflows.
• Consider adding a brief explanation or rationale in the PR description or documentation for the switch to property methods for __geo_interface__ to help users understand the benefits of this change.
• Given the updates to GitHub Actions and dependencies in the .github/workflows and .pre-commit-config.yaml files, it would be prudent to verify that all CI/CD pipelines execute as expected with these new versions.
• The addition of the .github/workflows/pr_agent.yml introduces automation for handling pull requests and issue comments. Ensure that the configuration aligns with the project's needs and that the necessary secrets (OPENAI_KEY, GITHUB_TOKEN) are securely set up.

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[codiumai-pr-agent-free]

PR Analysis

(review updated until commit 29094d3)

• 🎯 Main theme: Major refactor and enhancements in the pygeoif library
• 📝 PR summary: This PR introduces a major refactor in the geometry.py file, removing maybe_valid methods and updating GeoType and GeoCollectionType protocols to use a property instead of an attribute for __geo_interface__. It also updates several GitHub Actions workflows and pre-commit hooks to newer versions, adds badges to README.rst, updates pyproject.toml with a new classifier and configuration for the ruff tool, and adds a new GitHub Actions workflow for the PR Agent.
• 📌 Type of PR: Enhancement
• 🧪 Relevant tests added: No
• ⏱️ Estimated effort to review [1-5]: 4, because the PR includes a major refactor in the geometry.py file, which requires a deep understanding of the project and the changes made. It also includes updates in several other files, including GitHub Actions workflows and pre-commit hooks, which adds to the complexity of the review.
• 🔒 Security concerns: No security concerns found

PR Feedback

💡 General suggestions: The PR includes a major refactor in the geometry.py file, which could potentially introduce bugs. It would be beneficial to include unit tests for the changes made to ensure that they work as expected. Additionally, the PR includes changes in several other files, including GitHub Actions workflows and pre-commit hooks. It would be helpful to include a more detailed explanation of these changes in the PR description to help reviewers understand the purpose and impact of these changes.

---

✨ Usage guide:

---

Overview:
The review tool scans the PR code changes, and generates a PR review. The tool can be triggered automatically every time a new PR is opened, or can be invoked manually by commenting on any PR.
When commenting, to edit configurations related to the review tool (pr_reviewer section), use the following template:

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With a configuration file, use the following template:

[pr_reviewer]
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some_config2=...

Utilizing extra instructions The review tool can be configured with extra instructions, which can be used to guide the model to a feedback tailored to the needs of your project. Be specific, clear, and concise in the instructions. With extra instructions, you are the prompter. Specify the relevant sub-tool, and the relevant aspects of the PR that you want to emphasize. Examples for extra instructions: [pr_reviewer] # /review # extra_instructions=""" In the 'general suggestions' section, emphasize the following: - Does the code logic cover relevant edge cases? - Is the code logic clear and easy to understand? - Is the code logic efficient? ... """ Use triple quotes to write multi-line instructions. Use bullet points to make the instructions more readable.

How to enable\disable automation When you first install PR-Agent app, the default mode for the review tool is: pr_commands = ["/review", ...] meaning the review tool will run automatically on every PR, with the default configuration. Edit this field to enable/disable the tool, or to change the used configurations

Auto-labels The review tool can auto-generate two specific types of labels for a PR: a possible security issue label, that detects possible security issues (enable_review_labels_security flag) a Review effort [1-5]: x label, where x is the estimated effort to review the PR (enable_review_labels_effort flag)

Extra sub-tools The review tool provides a collection of possible feedbacks about a PR. It is recommended to review the possible options, and choose the ones relevant for your use case. Some of the feature that are disabled by default are quite useful, and should be considered for enabling. For example: require_score_review, require_soc2_ticket, and more.

More PR-Agent commands To invoke the PR-Agent, add a comment using one of the following commands: /review: Request a review of your Pull Request. /describe: Update the PR title and description based on the contents of the PR. /improve [--extended]: Suggest code improvements. Extended mode provides a higher quality feedback. /ask <QUESTION>: Ask a question about the PR. /update_changelog: Update the changelog based on the PR's contents. /add_docs 💎: Generate docstring for new components introduced in the PR. /generate_labels 💎: Generate labels for the PR based on the PR's contents. /analyze 💎: Automatically analyzes the PR, and presents changes walkthrough for each component. See the tools guide for more details. To list the possible configuration parameters, add a /config comment.

See the review usage page for a comprehensive guide on using this tool.

[qodo-merge-pro]

PR Description updated to latest commit (29094d3)

[codiumai-pr-agent-free]

Persistent review updated to latest commit 29094d3

[qodo-merge-pro]

Persistent review updated to latest commit 29094d3

[codiumai-pr-agent-free]

PR Code Suggestions

	Suggestions
best practice	Add a docstring to the Point class                               Add a docstring to the Point class pygeoif/geometry.py [233] class Point(_Geometry): + """ + A point geometry. + """ Add a docstring to the LineString class                          Add a docstring to the LineString class pygeoif/geometry.py [339] class LineString(_Geometry): + """ + A linestring geometry. + """ Add a docstring to the Polygon class                             Add a docstring to the Polygon class pygeoif/geometry.py [536] class Polygon(_Geometry): + """ + A polygon geometry. + """ Add a docstring to the MultiPoint class                          Add a docstring to the MultiPoint class pygeoif/geometry.py [747] class MultiPoint(_MultiGeometry): + """ + A collection of point geometries. + """
enhancement	Update the versions of the pre-commit hooks to the latest stable versions.    Update the versions of the pre-commit hooks to the latest stable versions. .pre-commit-config.yaml [35-49] - repo: https://github.com/pycqa/isort rev: 5.13.2 - repo: https://github.com/psf/black rev: 24.1.1 - repo: https://github.com/astral-sh/ruff-pre-commit rev: 'v0.1.14' - repo: https://github.com/PyCQA/flake8 rev: 7.0.0 +- repo: https://github.com/pre-commit/mirrors-mypy + rev: v1.8.0 +- repo: https://github.com/abravalheri/validate-pyproject + rev: v0.16 +- repo: https://github.com/kieran-ryan/pyprojectsort + rev: v0.3.0 +- repo: https://github.com/python-jsonschema/check-jsonschema + rev: "0.27.3" Update the 'actions/setup-python' action to the latest version (v5).          Update the 'actions/setup-python' action to the latest version (v5). .github/workflows/run-all-tests.yml [17] - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 Update the 'codecov/codecov-action' action to the latest version (v4) and provide the 'CODECOV_TOKEN' secret. Update the 'codecov/codecov-action' action to the latest version (v4) and provide the 'CODECOV_TOKEN' secret. .github/workflows/run-all-tests.yml [29-33] - name: "Upload coverage to Codecov" if: ${{ matrix.python-version==3.11 }} - uses: codecov/codecov-action@v3 + uses: codecov/codecov-action@v4 with: fail_ci_if_error: true verbose: true - token: ${{ env.CODECOV_TOKEN }} + token: ${{ secrets.CODECOV_TOKEN }} Update the 'actions/setup-python' action to the latest version (v5).          Update the 'actions/setup-python' action to the latest version (v5). .github/workflows/run-all-tests.yml [41] - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 Update the 'actions/setup-python' action to the latest version (v5).          Update the 'actions/setup-python' action to the latest version (v5). .github/workflows/run-all-tests.yml [71] - name: Set up Python ${{ matrix.pypy-version }} - uses: actions/setup-python@v4 + uses: actions/setup-python@v5

---

✨ Usage guide:

---

Overview:
The improve tool scans the PR code changes, and automatically generates suggestions for improving the PR code. The tool can be triggered automatically every time a new PR is opened, or can be invoked manually by commenting on a PR.
When commenting, to edit configurations related to the improve tool (pr_code_suggestions section), use the following template:

/improve --pr_code_suggestions.some_config1=... --pr_code_suggestions.some_config2=...

With a configuration file, use the following template:

[pr_code_suggestions]
some_config1=...
some_config2=...

Enabling\disabling automation When you first install the app, the default mode for the improve tool is: pr_commands = ["/improve --pr_code_suggestions.summarize=true", ...] meaning the improve tool will run automatically on every PR, with summarization enabled. Delete this line to disable the tool from running automatically.

Utilizing extra instructions Extra instructions are very important for the improve tool, since they enable to guide the model to suggestions that are more relevant to the specific needs of the project. Be specific, clear, and concise in the instructions. With extra instructions, you are the prompter. Specify relevant aspects that you want the model to focus on. Examples for extra instructions: [pr_code_suggestions] # /improve # extra_instructions=""" Emphasize the following aspects: - Does the code logic cover relevant edge cases? - Is the code logic clear and easy to understand? - Is the code logic efficient? ... """ Use triple quotes to write multi-line instructions. Use bullet points to make the instructions more readable.

A note on code suggestions quality While the current AI for code is getting better and better (GPT-4), it's not flawless. Not all the suggestions will be perfect, and a user should not accept all of them automatically. Suggestions are not meant to be simplistic. Instead, they aim to give deep feedback and raise questions, ideas and thoughts to the user, who can then use his judgment, experience, and understanding of the code base. Recommended to use the 'extra_instructions' field to guide the model to suggestions that are more relevant to the specific needs of the project, or use the custom suggestions 💎 tool With large PRs, best quality will be obtained by using 'improve --extended' mode.

More PR-Agent commands To invoke the PR-Agent, add a comment using one of the following commands: /review: Request a review of your Pull Request. /describe: Update the PR title and description based on the contents of the PR. /improve [--extended]: Suggest code improvements. Extended mode provides a higher quality feedback. /ask <QUESTION>: Ask a question about the PR. /update_changelog: Update the changelog based on the PR's contents. /add_docs 💎: Generate docstring for new components introduced in the PR. /generate_labels 💎: Generate labels for the PR based on the PR's contents. /analyze 💎: Automatically analyzes the PR, and presents changes walkthrough for each component. See the tools guide for more details. To list the possible configuration parameters, add a /config comment.

See the improve usage page for a more comprehensive guide on using this tool.

[qodo-merge-pro]

PR Code Suggestions

	Suggestions
enhancement	Update the docstring to accurately describe when a LineString is considered empty. Update the docstring for LineString.is_empty to reflect the current implementation logic. pygeoif/geometry.py [386] -A Linestring is considered empty when it has no points. +A Linestring is considered empty when it has no points, aligning with the current implementation logic that checks for zero points. Update the copyright year to the current year.                                Update the copyright year to 2024 to reflect the current year. pygeoif/geometry.py [2] -# Copyright (C) 2012 -2024 Christian Ledermann +# Copyright (C) 2012 - 2024 Christian Ledermann Update the package version to the new release version.                        Update the package version to "1.3.0" in the about.py module. pygeoif/about.py [7] -__version__ = "1.3.0" +__version__ = "1.3.0" # Updated version Upgrade CodeQL GitHub Actions to the latest version for improved analysis.    Upgrade the CodeQL GitHub Actions to version 3 to utilize the latest features and improvements. .github/workflows/codeql-analysis.yml [46-71] -uses: github/codeql-action/init@v3 -uses: github/codeql-action/autobuild@v3 -uses: github/codeql-action/analyze@v3 +uses: github/codeql-action/init@v3 # Upgraded to v3 +uses: github/codeql-action/autobuild@v3 # Upgraded to v3 +uses: github/codeql-action/analyze@v3 # Upgraded to v3 Expand the ruff linter configuration for improved code quality.  Update the ruff linter configuration to include a more comprehensive set of linting rules, ensuring code quality and consistency. .pre-commit-config.yaml [46] -args: [--fix, --exit-non-zero-on-fix] +args: [--fix, --exit-non-zero-on-fix, --select-all]
maintainability	Remove unused, commented-out code to improve code maintainability.            Remove the commented-out maybe_valid property and associated logic from LineString and Polygon classes to clean up the codebase. pygeoif/geometry.py [379-397] -# @property -# def maybe_valid(self) -> bool: -# ... +(Remove the commented-out code) Correct the link to the tests directory in the README for better navigation.  Update the link to the tests directory to reflect the new structure, ensuring that users can find examples easily. README.rst [118] -`tests <https://github.com/cleder/pygeoif/tree/main/tests>`_ +`tests <https://github.com/cleder/pygeoif/tree/main/src/tests>`_ # Assuming the tests have been moved to the src directory
best practice	Specify a precise version for the GitHub Action to enhance workflow stability. Consider specifying a more precise version or commit SHA for the Codium-ai/pr-agent action to ensure the workflow's stability and predictability. .github/workflows/pr_agent.yml [12] -uses: Codium-ai/pr-agent@main +uses: Codium-ai/[email protected] # Example version, replace with the desired one Update the Codecov GitHub Action to the latest stable version for security and reliability. Ensure that the codecov/codecov-action version aligns with the latest secure and stable release to maintain the security and reliability of your CI pipeline. .github/workflows/run-all-tests.yml [29] -uses: codecov/codecov-action@v4 +uses: codecov/[email protected] # Example version, replace with the latest stable version Define a minimum Python version requirement for better compatibility management. Specify a minimum Python version in the pyproject.toml to ensure that the project does not inadvertently become incompatible with the versions of Python it intends to support. pyproject.toml [155-156] [tool.ruff] fix = true +python_requires = ">=3.8"

---

✨ Usage guide:

---

Overview:
The improve tool scans the PR code changes, and automatically generates suggestions for improving the PR code. The tool can be triggered automatically every time a new PR is opened, or can be invoked manually by commenting on a PR.
When commenting, to edit configurations related to the improve tool (pr_code_suggestions section), use the following template:

/improve --pr_code_suggestions.some_config1=... --pr_code_suggestions.some_config2=...

With a configuration file, use the following template:

[pr_code_suggestions]
some_config1=...
some_config2=...

Enabling\disabling automation When you first install the app, the default mode for the improve tool is: pr_commands = ["/improve --pr_code_suggestions.summarize=true", ...] meaning the improve tool will run automatically on every PR, with summarization enabled. Delete this line to disable the tool from running automatically.

Utilizing extra instructions Extra instructions are very important for the improve tool, since they enable to guide the model to suggestions that are more relevant to the specific needs of the project. Be specific, clear, and concise in the instructions. With extra instructions, you are the prompter. Specify relevant aspects that you want the model to focus on. Examples for extra instructions: [pr_code_suggestions] # /improve # extra_instructions=""" Emphasize the following aspects: - Does the code logic cover relevant edge cases? - Is the code logic clear and easy to understand? - Is the code logic efficient? ... """ Use triple quotes to write multi-line instructions. Use bullet points to make the instructions more readable.

A note on code suggestions quality While the current AI for code is getting better and better (GPT-4), it's not flawless. Not all the suggestions will be perfect, and a user should not accept all of them automatically. Suggestions are not meant to be simplistic. Instead, they aim to give deep feedback and raise questions, ideas and thoughts to the user, who can then use his judgment, experience, and understanding of the code base. Recommended to use the 'extra_instructions' field to guide the model to suggestions that are more relevant to the specific needs of the project, or use the custom suggestions 💎 tool With large PRs, best quality will be obtained by using 'improve --extended' mode.

More PR-Agent commands To invoke the PR-Agent, add a comment using one of the following commands: /review: Request a review of your Pull Request. /describe: Update the PR title and description based on the contents of the PR. /improve [--extended]: Suggest code improvements. Extended mode provides a higher quality feedback. /ask <QUESTION>: Ask a question about the PR. /update_changelog: Update the changelog based on the PR's contents. /add_docs 💎: Generate docstring for new components introduced in the PR. /generate_labels 💎: Generate labels for the PR based on the PR's contents. /analyze 💎: Automatically analyzes the PR, and presents changes walkthrough for each component. See the tools guide for more details. To list the possible configuration parameters, add a /config comment.

See the improve usage page for a more comprehensive guide on using this tool.