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@cidm-ph

Centre for Infectious Diseases and Microbiology - Public Health

Popular repositories Loading

  1. ggmapinset ggmapinset Public

    Add zoomed inset panels to your ggplot maps

    R 36

  2. ggautomap ggautomap Public

    Create ggplot maps from a column of place names

    R 24

  3. cartographer cartographer Public

    Turn place names into map data

    R 3

  4. STECode STECode Public

    Virulence barcoding for STEC

    Python 1

  5. obsim obsim Public

    Outbreak simulation based on a branching process

    Rust 1

  6. HiRes HiRes Public

    Pipeline to assess resistance markers in Haemophilus influenzae for betalactamases, cephalosporins and fluoroquinolones

    Python

Repositories

Showing 10 of 11 repositories
  • pertpipe Public

    Pipeline for full analysis of Bordetella pertussis, particularly for the detection of macrolide resistance & vaccine antigen mutations

    Python 0 GPL-3.0 0 0 0 Updated Feb 4, 2025
  • obsim Public

    Outbreak simulation based on a branching process

    Rust 1 Apache-2.0 0 0 4 Updated Feb 3, 2025
  • phylepic Public

    Epidemic curve + phylogenomic tree

    R 0 0 0 0 Updated Jan 10, 2025
  • HiRes Public

    Pipeline to assess resistance markers in Haemophilus influenzae for betalactamases, cephalosporins and fluoroquinolones

    Python 0 GPL-3.0 0 0 0 Updated Dec 24, 2024
  • STECode Public

    Virulence barcoding for STEC

    Python 1 GPL-3.0 0 0 0 Updated Dec 20, 2024
  • ggmapinset Public

    Add zoomed inset panels to your ggplot maps

    R 36 0 3 0 Updated Dec 18, 2024
  • nswgeo Public

    Geospatial data and maps for New South Wales, Australia

    R 0 1 1 0 Updated Dec 17, 2024
  • distmat Public

    Distance matrix data types and file formats for Rust

    Rust 0 Apache-2.0 0 0 1 Updated Nov 11, 2024
  • cidm-ph.r-universe.dev Public
    0 0 0 0 Updated Apr 2, 2024
  • cartographer Public

    Turn place names into map data

    R 3 0 1 0 Updated Jan 28, 2024
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