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environment.yaml
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name: pacqproc
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- aioeasywebdav=2.4.0=pyha770c72_0
- aiosignal=1.2.0=pyhd8ed1ab_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=21.4.0=pyhd8ed1ab_0
- backports=1.1=pyhd3eb1b0_0
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- boto3=1.20.40=pyhd8ed1ab_0
- botocore=1.23.40=pyhd8ed1ab_0
- brotli=1.0.9=h7f98852_6
- brotli-bin=1.0.9=h7f98852_6
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.26=h06a4308_2
- cachetools=4.2.4=pyhd8ed1ab_0
- cairo=1.16.0=ha00ac49_1009
- charset-normalizer=2.0.10=pyhd8ed1ab_0
- coincbc=2.10.5=hcee13e7_1
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cycler=0.11.0=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dropbox=11.25.0=pyhd8ed1ab_0
- expat=2.4.3=h9c3ff4c_0
- fftw=3.3.10=nompi_h77c792f_102
- filechunkio=1.8=py_2
- filelock=3.4.2=pyhd8ed1ab_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.11.0=h70c0345_0
- fribidi=1.0.10=h516909a_0
- ftputil=5.0.2=pyhd8ed1ab_0
- gdk-pixbuf=2.42.6=h04a7f16_0
- gettext=0.21.0=hf68c758_0
- ghostscript=9.54.0=h9c3ff4c_1
- giflib=5.2.1=h516909a_2
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.26=pyhd8ed1ab_0
- google-api-core=2.4.0=pyhd8ed1ab_0
- google-api-python-client=2.36.0=pyhd8ed1ab_0
- google-auth=2.3.3=pyh6c4a22f_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_0
- google-cloud-core=2.2.2=pyh6c4a22f_0
- google-cloud-storage=2.0.0=pyh6c4a22f_0
- google-resumable-media=2.1.0=pyh6c4a22f_0
- graphite2=1.3.14=h23475e2_0
- graphviz=2.50.0=h85b4f2f_1
- gtk2=2.24.33=h539f30e_1
- gts=0.7.6=h64030ff_2
- harfbuzz=3.2.0=hb4a5f5f_0
- httplib2=0.20.2=pyhd8ed1ab_1
- icu=69.1=h9c3ff4c_0
- idna=3.3=pyhd8ed1ab_0
- imagemagick=7.1.0_19=pl5321hb118871_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jinja2=3.0.3=pyhd8ed1ab_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=h516909a_0
- jsonschema=4.4.0=pyhd8ed1ab_0
- jupyter_core=4.9.1=py310hff52083_1
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=13_linux64_openblas
- libbrotlicommon=1.0.9=h7f98852_6
- libbrotlidec=1.0.9=h7f98852_6
- libbrotlienc=1.0.9=h7f98852_6
- libcblas=3.9.0=13_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libdeflate=1.8=h7f98852_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=11.2.0=h1d223b6_11
- libgd=2.3.3=h3cfcdeb_1
- libgfortran-ng=11.2.0=h69a702a_11
- libgfortran5=11.2.0=h5c6108e_11
- libglib=2.70.2=h174f98d_1
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=13_linux64_openblas
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.37=hed695b0_2
- libprotobuf=3.19.3=h780b84a_0
- librsvg=2.52.5=hc3c00ef_1
- libsodium=1.0.18=h516909a_1
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtiff=4.3.0=h6f004c6_2
- libtool=2.4.6=h9c3ff4c_1008
- libuuid=2.32.1=h14c3975_1000
- libwebp=1.2.1=h3452ae3_0
- libwebp-base=1.2.1=h7f98852_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h885dcf4_1
- libzlib=1.2.11=h36c2ea0_1013
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h9c3ff4c_1
- matplotlib-base=3.5.1=py310h23f4a51_0
- munkres=1.1.4=pyh9f0ad1d_0
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- networkx=2.6.3=pyhd8ed1ab_1
- oauth2client=4.1.3=py_0
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hb52868f_1
- openssl=3.0.0=h7f98852_2
- packaging=21.3=pyhd8ed1ab_0
- pango=1.48.10=h54213e6_2
- paramiko=2.9.2=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- peppy=0.31.2=pyhd8ed1ab_2
- perl=5.32.1=1_h7f98852_perl5
- pip=21.3.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h516909a_1008
- ply=3.11=py_1
- prettytable=3.0.0=pyhd8ed1ab_0
- py=1.11.0=pyh6c4a22f_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- pyopenssl=21.0.0=pyhd8ed1ab_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pysftp=0.2.9=py_1
- python=3.10.2=h543edf9_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-irodsclient=1.1.0=pyhd8ed1ab_0
- python_abi=3.10=2_cp310
- pytz=2021.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- ratelimiter=1.2.0=py_1002
- readline=8.1=h46c0cb4_0
- requests=2.27.1=pyhd8ed1ab_0
- rsa=4.8=pyhd8ed1ab_0
- s3transfer=0.5.0=pyhd8ed1ab_0
- setuptools-scm=6.4.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=5.2.1=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=6.13.1=hdfd78af_0
- snakemake-minimal=6.13.1=pyhdfd78af_0
- sqlite=3.37.0=h9cd32fc_0
- stone=3.2.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tabulate=0.8.9=pyhd8ed1ab_0
- tk=8.6.11=h27826a3_1
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.0=pyhd8ed1ab_1
- toposort=1.7=pyhd8ed1ab_0
- traitlets=5.1.1=pyhd8ed1ab_0
- typing-extensions=4.0.1=hd8ed1ab_0
- typing_extensions=4.0.1=pyha770c72_0
- tzdata=2021e=he74cb21_0
- ubiquerg=0.6.1=pyh9f0ad1d_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.8=pyhd8ed1ab_1
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h7f98852_2
- zipp=3.7.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.2=ha95c52a_0
- pip:
- aiohttp==3.8.1
- bcrypt==3.2.0
- brotlipy==0.7.0
- certifi==2021.10.8
- cffi==1.15.0
- cryptography==36.0.0
- datrie==0.8.2
- docutils==0.18.1
- fonttools==4.28.5
- frozenlist==1.2.0
- google-crc32c==1.1.2
- googleapis-common-protos==1.54.0
- grpcio==1.42.0
- importlib-metadata==4.10.1
- jupyter-core==4.9.1
- kiwisolver==1.3.2
- markupsafe==2.0.1
- matplotlib==3.5.1
- multidict==5.2.0
- numpy==1.22.0
- pandas==1.3.5
- pillow==8.4.0
- pluggy==1.0.0
- protobuf==3.19.3
- psutil==5.9.0
- pulp==2.6.0
- pygraphviz==1.7
- pynacl==1.5.0
- pyrsistent==0.18.1
- pysocks==1.7.1
- pytest==6.2.5
- pyyaml==6.0
- scipy==1.7.3
- setuptools==59.8.0
- wrapt==1.13.3
- yarl==1.7.2
- git+https://github.com/chunglabmit/mp_shared_memory.git
- https://github.com/chunglabmit/tsv/archive/master.zip
- https://github.com/chunglabmit/pystripe/archive/master.zip
- https://github.com/chunglabmit/blockfs/archive/master.zip
- https://github.com/chunglabmit/precomputed-tif/archive/master.zip