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DESCRIPTION
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DESCRIPTION
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Package: simATAC
Version: 1.0.0
Date: 2020-07-27
Title: This package is a single-cell ATAC-seq simulator
Authors@R: person(given = "Zeinab", family = "Navidi Ghaziani", email = "[email protected]", role = c("aut", "cre"))
Description: This package provides a set of functions to simulate single-cell ATAC-seq
count matrix from real single-cell samples, highly resembling real scATAC-seq
datasets in library size, sparsity, and averaged chromatin accessibility
signals. simATAC estimates the parameters of statistical distributions fitted
to the main parameters, and generates the final synthetic counts using the
estimated models.
biocViews: Software
URL: https://github.com/bowang-lab/simATAC
BugReports: https://github.com/bowang-lab/simATAC/issues
Depends:
SingleCellExperiment
Imports:
BiocGenerics,
Matrix,
SummarizedExperiment,
checkmate,
imguR,
ggplot2,
ggpubr,
methods,
mixtools,
rhdf5 (>= 2.20.0),
stats,
stats4,
utils
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1