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Extension doesn't stay installed #44

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zemmyang opened this issue Oct 8, 2024 · 2 comments
Open

Extension doesn't stay installed #44

zemmyang opened this issue Oct 8, 2024 · 2 comments

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@zemmyang
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zemmyang commented Oct 8, 2024

  • I open Slicer
  • I install the extension using Developer Tools -> Extension Wizard -> Select Extension
  • Extension is installed and I can use it
  • I close Slicer
  • I re-open Slicer in the same method that I originally opened it (in my case, through the CLI)
  • MedSAM2 is no longer installed

I installed MedSAM through the same method and it stays installed in Slicer upon re-opening, so something different must be with MedSAM2

@rasakereh
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Can you check the "Additional Module Paths" after importing and after re-opening slicer? To view "Additional Module Paths":
Edit > Application Settings > Modules > Additional Module Paths
You should see a list of paths and SAM2 directory should be there both times. Lmk the result

@lzhangsh
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ya, I had the same issue:
image
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image

I guess there could be some issue while installing the environment though. I used CUDA12.1 on my RTX A4000.

  1. it failed executing """pip install -e ."""
    image
    but I did have numpy in the environment
    09b93fd8c5a0f0c0409f42575c33a04b
  2. because it failed on """pip install -e .""", I tried """python setup.py install""" and manually downloaded the dependent tools
    image
    image
    I'm not sure whether the installation works cause it has such a warning
    image

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3 participants