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Bump version to 4.1.2, update changelog
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ZedThree committed Dec 1, 2017
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77 changes: 77 additions & 0 deletions CHANGELOG.md
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# Change Log

## [v4.1.2](https://github.com/boutproject/BOUT-dev/tree/v4.1.2) (2017-12-01)
[Full Changelog](https://github.com/boutproject/BOUT-dev/compare/v4.1.1...v4.1.2)

**Fixed bugs:**

- ./configure deadlock [\#744](https://github.com/boutproject/BOUT-dev/issues/744)
- Typo in unit test makefile? [\#730](https://github.com/boutproject/BOUT-dev/issues/730)
- Laplacian Serial\_tri incorrect operation [\#727](https://github.com/boutproject/BOUT-dev/issues/727)
- memory leak in pylib/boututils/showdata [\#231](https://github.com/boutproject/BOUT-dev/issues/231)
- Fix minor typo in unit test makefile [\#731](https://github.com/boutproject/BOUT-dev/pull/731) ([d7919](https://github.com/d7919))

**Closed issues:**

- Test fci-slab [\#748](https://github.com/boutproject/BOUT-dev/issues/748)
- BOUT.log is hardcoded [\#745](https://github.com/boutproject/BOUT-dev/issues/745)
- FFT for DDZ hard coded parameters [\#647](https://github.com/boutproject/BOUT-dev/issues/647)
- genZMode no longer used? [\#645](https://github.com/boutproject/BOUT-dev/issues/645)
- Vector applyBoundary [\#584](https://github.com/boutproject/BOUT-dev/issues/584)

**Merged pull requests:**

- Bug fix bout runners [\#758](https://github.com/boutproject/BOUT-dev/pull/758) ([loeiten](https://github.com/loeiten))
- Fix bug in infinite recursion in configure when netcdf not found [\#754](https://github.com/boutproject/BOUT-dev/pull/754) ([ZedThree](https://github.com/ZedThree))
- disable plotting in test-fci-slab [\#753](https://github.com/boutproject/BOUT-dev/pull/753) ([dschwoerer](https://github.com/dschwoerer))
- Fixing bug in calculation of non-uniform correction [\#739](https://github.com/boutproject/BOUT-dev/pull/739) ([bendudson](https://github.com/bendudson))
- Laplacexy examples fix [\#733](https://github.com/boutproject/BOUT-dev/pull/733) ([bendudson](https://github.com/bendudson))
- Small fixes for serial\_tri Laplace solver [\#729](https://github.com/boutproject/BOUT-dev/pull/729) ([bendudson](https://github.com/bendudson))
- Adding missing \_\_setitem\_\_ and keys\(\) functions [\#728](https://github.com/boutproject/BOUT-dev/pull/728) ([bendudson](https://github.com/bendudson))
- Manual fix [\#721](https://github.com/boutproject/BOUT-dev/pull/721) ([dschwoerer](https://github.com/dschwoerer))

## [v4.1.1](https://github.com/boutproject/BOUT-dev/tree/v4.1.1) (2017-10-18)
[Full Changelog](https://github.com/boutproject/BOUT-dev/compare/v4.1.0...v4.1.1)

**Fixed bugs:**

- Generalise the "boundaries" section of Delp2 for Field3D [\#708](https://github.com/boutproject/BOUT-dev/pull/708) ([d7919](https://github.com/d7919))
- Cleanup array :: cleanup all at end of sim [\#706](https://github.com/boutproject/BOUT-dev/pull/706) ([d7919](https://github.com/d7919))
- Ensure VarStr entries are initialised in all cases [\#705](https://github.com/boutproject/BOUT-dev/pull/705) ([d7919](https://github.com/d7919))
- Initialise `covar` for all `VarStr` instances [\#704](https://github.com/boutproject/BOUT-dev/pull/704) ([d7919](https://github.com/d7919))
- Removing Field3D move constructor [\#699](https://github.com/boutproject/BOUT-dev/pull/699) ([bendudson](https://github.com/bendudson))
- Field3D default move constructor leading to segfaults [\#698](https://github.com/boutproject/BOUT-dev/issues/698)
- Unit test seg fault \(`Output::cleanup`\) -- order dependent [\#693](https://github.com/boutproject/BOUT-dev/issues/693)
- test-fci-slab fix: Don't show plot by default [\#692](https://github.com/boutproject/BOUT-dev/pull/692) ([d7919](https://github.com/d7919))

**Closed issues:**

- Integrated tests don't all compile and not all used [\#701](https://github.com/boutproject/BOUT-dev/issues/701)
- PYTHONPATH in tests [\#695](https://github.com/boutproject/BOUT-dev/issues/695)
- Dynamic casts in `ConditionalOutput` [\#691](https://github.com/boutproject/BOUT-dev/issues/691)
- Segfault when increasing verbosity [\#690](https://github.com/boutproject/BOUT-dev/issues/690)
- v4.1 release candidate [\#640](https://github.com/boutproject/BOUT-dev/issues/640)
- -DCHECK changes memory layout [\#594](https://github.com/boutproject/BOUT-dev/issues/594)
- nx and ny constant for different processors [\#560](https://github.com/boutproject/BOUT-dev/issues/560)
- release notes [\#504](https://github.com/boutproject/BOUT-dev/issues/504)
- y initial conditions always at CELL\_YLOW [\#484](https://github.com/boutproject/BOUT-dev/issues/484)
- Free boundaries [\#429](https://github.com/boutproject/BOUT-dev/issues/429)
- Adding TRACE and BoutException to monitors [\#355](https://github.com/boutproject/BOUT-dev/issues/355)
- indexDDZ \(staggered\) [\#335](https://github.com/boutproject/BOUT-dev/issues/335)
- Reducing compiler warnings [\#322](https://github.com/boutproject/BOUT-dev/issues/322)
- Derivatives: free boundary - Issues if MXG not 2 [\#250](https://github.com/boutproject/BOUT-dev/issues/250)

**Merged pull requests:**

- Fix broken links, code blocks and tables in documentation [\#722](https://github.com/boutproject/BOUT-dev/pull/722) ([ZedThree](https://github.com/ZedThree))
- Small bug fixes for Options/OptionsReader and their tests [\#718](https://github.com/boutproject/BOUT-dev/pull/718) ([ZedThree](https://github.com/ZedThree))
- Update user manual: --enable-checks is the configure option for checking [\#717](https://github.com/boutproject/BOUT-dev/pull/717) ([JosephThomasParker](https://github.com/JosephThomasParker))
- Make sure link flags apply correctly to unit tests [\#715](https://github.com/boutproject/BOUT-dev/pull/715) ([ZedThree](https://github.com/ZedThree))
- throw exception if staggererd deriv in z direction [\#714](https://github.com/boutproject/BOUT-dev/pull/714) ([dschwoerer](https://github.com/dschwoerer))
- Set PYTHONPATH for tests [\#713](https://github.com/boutproject/BOUT-dev/pull/713) ([ZedThree](https://github.com/ZedThree))
- A few small fixes and tests for Output/ConditionalOutput [\#712](https://github.com/boutproject/BOUT-dev/pull/712) ([ZedThree](https://github.com/ZedThree))
- Output message if NetCDF4 support is enabled [\#711](https://github.com/boutproject/BOUT-dev/pull/711) ([ZedThree](https://github.com/ZedThree))
- Make bout\_test\_main.o depend on source file [\#710](https://github.com/boutproject/BOUT-dev/pull/710) ([ZedThree](https://github.com/ZedThree))
- Make shiftedmetric use const refs when possible [\#703](https://github.com/boutproject/BOUT-dev/pull/703) ([d7919](https://github.com/d7919))
- Some fixes to the integrated tests [\#702](https://github.com/boutproject/BOUT-dev/pull/702) ([bendudson](https://github.com/bendudson))
- Add an option "ddz:fft\_filter" to control filtering in DDZ [\#700](https://github.com/boutproject/BOUT-dev/pull/700) ([bendudson](https://github.com/bendudson))
- Multigrid solver memory leak bugfix [\#696](https://github.com/boutproject/BOUT-dev/pull/696) ([johnomotani](https://github.com/johnomotani))
- Bugfix: Checkout googletest if not available [\#694](https://github.com/boutproject/BOUT-dev/pull/694) ([bendudson](https://github.com/bendudson))

## [v4.1.0](https://github.com/boutproject/BOUT-dev/tree/v4.1.0) (2017-09-20)
[Full Changelog](https://github.com/boutproject/BOUT-dev/compare/v4.0.1...v4.1.0)
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22 changes: 11 additions & 11 deletions configure
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@@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for BOUT++ 4.1.1.
# Generated by GNU Autoconf 2.69 for BOUT++ 4.1.2.
#
# Report bugs to <[email protected]>.
#
Expand Down Expand Up @@ -580,8 +580,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='BOUT++'
PACKAGE_TARNAME='bout--'
PACKAGE_VERSION='4.1.1'
PACKAGE_STRING='BOUT++ 4.1.1'
PACKAGE_VERSION='4.1.2'
PACKAGE_STRING='BOUT++ 4.1.2'
PACKAGE_BUGREPORT='[email protected]'
PACKAGE_URL=''

Expand Down Expand Up @@ -1338,7 +1338,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures BOUT++ 4.1.1 to adapt to many kinds of systems.
\`configure' configures BOUT++ 4.1.2 to adapt to many kinds of systems.

Usage: $0 [OPTION]... [VAR=VALUE]...

Expand Down Expand Up @@ -1399,7 +1399,7 @@ fi

if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of BOUT++ 4.1.1:";;
short | recursive ) echo "Configuration of BOUT++ 4.1.2:";;
esac
cat <<\_ACEOF

Expand Down Expand Up @@ -1522,7 +1522,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
BOUT++ configure 4.1.1
BOUT++ configure 4.1.2
generated by GNU Autoconf 2.69

Copyright (C) 2012 Free Software Foundation, Inc.
Expand Down Expand Up @@ -2103,7 +2103,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by BOUT++ $as_me 4.1.1, which was
It was created by BOUT++ $as_me 4.1.2, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ $0 $@
Expand Down Expand Up @@ -15853,7 +15853,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by BOUT++ $as_me 4.1.1, which was
This file was extended by BOUT++ $as_me 4.1.2, which was
generated by GNU Autoconf 2.69. Invocation command line was

CONFIG_FILES = $CONFIG_FILES
Expand Down Expand Up @@ -15906,7 +15906,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
BOUT++ config.status 4.1.1
BOUT++ config.status 4.1.2
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

Expand Down Expand Up @@ -17077,7 +17077,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by BOUT++ $as_me 4.1.1, which was
This file was extended by BOUT++ $as_me 4.1.2, which was
generated by GNU Autoconf 2.69. Invocation command line was

CONFIG_FILES = $CONFIG_FILES
Expand Down Expand Up @@ -17130,7 +17130,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
BOUT++ config.status 4.1.1
BOUT++ config.status 4.1.2
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

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2 changes: 1 addition & 1 deletion configure.ac
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Expand Up @@ -32,7 +32,7 @@
#

AC_PREREQ(2.59)
AC_INIT(BOUT++, 4.1.1, [email protected])
AC_INIT(BOUT++, 4.1.2, [email protected])
AC_CONFIG_AUX_DIR([build-aux])
AC_CONFIG_MACRO_DIR([m4])

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2 changes: 1 addition & 1 deletion manual/sphinx/conf.py
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Expand Up @@ -109,7 +109,7 @@
# The short X.Y version.
version = '4.1'
# The full version, including alpha/beta/rc tags.
release = '4.1.1'
release = '4.1.2'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
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