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Update biolink-model.yaml for CTKP requirements #1526

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Oct 10, 2024
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20 changes: 16 additions & 4 deletions biolink-model.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -5568,7 +5568,6 @@ slots:

has confidence level:
is_a: association slot
range: confidence level
description: >-
connects an association to a qualitative term denoting the level of confidence

Expand All @@ -5590,7 +5589,7 @@ slots:
is_a: association slot
description: >-
The logarithm of the odds ratio, or the ratio of the odds of event Y occurring in an exposed group versus the
odds of event Y occurring in a non-exposed group.
odds of event Y occurring in a non-exposed group has
range: float

log odds ratio 95 ci:
Expand Down Expand Up @@ -6054,13 +6053,25 @@ slots:

max research phase:
is_a: association slot
range: MaxResearchPhaseEnum
range: ResearchPhaseEnum

has supporting studies:
is_a: association slot
range: Study
description: A study that produced information used as evidence to generate the knowledge expressed in an Association.
multivalued: true

supporting study metadata:
is_a: association slot
description: >-
Information about a study used to generate information used as evidence to support the knowledge expressed in an
Association. In practice, data creators should use one of the more specific subtypes of this property.
comments:
- This is an abstract slot that groups a set of concrete slots used to directly attach to an association information
about a study that produced evidence used to generate the knowledge expressed in the edge.
- Note that these concrete 'supporting study metadata' slots are used only when a more normalized model that leverages
the 'supporting studdies' slot and 'Study' class to link to and describe the Study itself are not possible or preferred,
such that this study metadata must be captured directly on the edge.
abstract: true

supporting study method type:
Expand Down Expand Up @@ -9365,6 +9376,7 @@ classes:
- retrieval source ids
- p value
- adjusted p value
- has supporting studies
slot_usage:
type:
description: rdf:type of biolink:Association should be fixed at rdf:Statement
Expand Down Expand Up @@ -11658,7 +11670,7 @@ enums:
is_a: not_approved_for_condition
not_provided:

MaxResearchPhaseEnum:
ResearchPhaseEnum:
permissible_values:
pre_clinical_research_phase:
description: >-
Expand Down
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