Merge pull request #1500 from biolink/chemical_prefixes_redo

make necessary changes to id_prefixes for chemical entity hierarchy
biolink · Jul 26, 2024 · 370e49a · 370e49a
2 parents 1c297f3 + 3643138
commit 370e49a
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Showing 12 changed files with 22,064 additions and 22,019 deletions.
diff --git a/biolink-model.yaml b/biolink-model.yaml
diff --git a/project/graphql/biolink_model.graphql b/project/graphql/biolink_model.graphql
@@ -6678,6 +6678,7 @@ type SiRNA
 
 type SmallMolecule
   {
+    id: String!
     iri: IriType
     type: [String]
     name: LabelType
@@ -6695,7 +6696,6 @@ type SmallMolecule
     isToxic: Boolean
     hasChemicalRole: [ChemicalRole]
     isMetabolite: Boolean
-    id: String!
   }
 
 type Snv

diff --git a/project/jsonld/biolink_model.context.jsonld b/project/jsonld/biolink_model.context.jsonld
@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2024-07-26T01:02:00",
+      "generation_date": "2024-07-25T18:08:32",
       "source": "biolink_model.yaml"
    },
    "@context": {
@@ -347,8 +347,8 @@
          "@prefix": true
       },
       "PFAM": "http://identifiers.org/pfam/",
-      "PHARMGKB.CHEMICAL": "https://www.pharmgkb.org/chemical/",
       "PHARMGKB.DISEASE": "https://www.pharmgkb.org/disease/",
+      "PHARMGKB.DRUG": "https://www.pharmgkb.org/chemical/",
       "PHARMGKB.GENE": "https://www.pharmgkb.org/gene/",
       "PHARMGKB.PATHWAYS": "https://www.pharmgkb.org/pathway/",
       "PHARMGKB.VARIANT": "https://www.pharmgkb.org/variant/",