Allow custom hyperparameters be passed into somaticseq_parallel.py
Allow xgboost hyperparameters be passed into somaticseq_parallel.py
, e.g., somaticseq_parallel.py --somaticseq-train --extra-hyperparameters scale_pos_weight:0.1 seed:100
. Previously, they could only be passed into somatic_xgboost.py
. Beware, however, multi-argument options like --extra-hyperparameters
and --features-excluded
cannot be placed immediately before paired
or single
, because otherwise it'll try to include paired
or single
as an argument instead of invoking paired
or single
mode.