Update reseek to 2.3

recipes/reseek/arm_support.patch

@@ -0,0 +1,11 @@
+--- a/src/myutils.h
++++ b/src/myutils.h
+@@ -5,7 +5,7 @@
+ #define TRACK_ALLOC		0
+ #define USE_OMP			0
+
+-#if defined(__x86_64__) || defined(_M_X64)
++#if defined(__x86_64__) || defined(_M_X64) || defined(__arm64__) || defined(__aarch64__)
+ #define	BITS			64
+ #else
+ #define	BITS			32

recipes/reseek/build.sh

@@ -2,17 +2,39 @@
 set -e
 
 mkdir -p ${PREFIX}/bin
+
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include"
+export CFLAGS="${CFLAGS} -O3"
+
 cd src || exit 1
 echo "0" > gitver.txt
 
-cp ${RECIPE_DIR}/vcxproj_make.py .
-chmod +x vcxproj_make.py
-./vcxproj_make.py --openmp --cppcompiler ${CXX} --ccompiler ${CC}
+OS=$(uname)
+ARCH=$(uname -m)
+
+case $(uname -m) in
+	arm64|aarch64) cp -rfv ${RECIPE_DIR}/sse2neon.h ${SRC_DIR}/src/ ;;
+esac
+
+if [[ "${OS}" == "Darwin" && "${ARCH}" == "x86_64" ]]; then
+	cp -rf ${RECIPE_DIR}/vcxproj_make_osx.py .
+ 	chmod 0755 vcxproj_make_osx.py
+	python ./vcxproj_make_osx.py --openmp --lrt --pthread --cppcompiler "${CXX}" --ccompiler "${CC}"
+elif [[ "${OS}" == "Darwin" && "${ARCH}" == "arm64" ]]; then
+	cp -rf ${RECIPE_DIR}/vcxproj_make_osx.py .
+	chmod 0755 vcxproj_make_osx.py
+ 	python ./vcxproj_make_osx.py --openmp --lrt --pthread --nonative --cppcompiler "${CXX}" --ccompiler "${CC}"
+else
+	cp -rf ${RECIPE_DIR}/vcxproj_make.py .
+	chmod 0755 vcxproj_make.py
+ 	python ./vcxproj_make.py --openmp --lrt --pthread --std "c++17" --cppcompiler "${CXX}" --ccompiler "${CC}"
+fi
 
 # Verify binary exists and is executable
-if [ ! -f ../bin/reseek ]; then
+if [[ ! -f ../bin/reseek ]]; then
     echo "Error: reseek binary not found"
     exit 1
 fi
 
-cp ../bin/reseek ${PREFIX}/bin/reseek
+install -v -m 0755 ../bin/reseek ${PREFIX}/bin

recipes/reseek/meta.yaml

@@ -1,32 +1,48 @@
 {% set name = "reseek" %}
-{% set version = "2.02" %}
+{% set version = "2.3" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/rcedgar/reseek/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 83296e5edcdccdf4848f52ff34f35b753fa9ae1d383c3347eee41ef7d26888b1
+  sha256: 2c0fc59a0f54af067e80e607c28399978c17ec21cb02773e522cc792db696312
+  patches:
+    - arm_support.patch
+    - parasail.patch  # [aarch64 or arm64]
 
 build:
-  number: 1
-  skip: True  #[osx]
+  number: 0
   run_exports:
-    - {{ pin_subpackage(name, max_pin="x.x") }}
-
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler("cxx") }}
     - {{ compiler("c") }}
     - make
+  host:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
+  run:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
 
 test:
   commands:
     - reseek -version
+
 about:
   home: https://github.com/rcedgar/reseek
   license: GPL-3.0-only
   license_file: LICENSE
-  summary: Protein structure alignment and search algorithm
+  license_family: GPL3
+  summary: "Protein structure alignment and search algorithm."
+  dev_url: https://github.com/rcedgar/reseek
+  doc_url: https://drive5.com/reseek/doc.html
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64

recipes/reseek/parasail.patch

@@ -0,0 +1,20 @@
+diff --git a/src/parasail.h b/src/parasail.h
+index 950a4a5..6d58ba2 100644
+--- a/src/parasail.h
++++ b/src/parasail.h
+@@ -7,7 +7,15 @@ Author [email protected]
+ Copyright (c) 2015 Battelle Memorial Institute.
+ ***/
+
++#include <stdio.h>
++#include <stdint.h>
++#include <string.h>
++#ifdef __ARM_NEON
++#include "sse2neon.h"
++#else
+ #include <immintrin.h>
++#endif
++
+ /*                                            3         2         1          */
+ /*                                           10987654321098765432109876543210*/
+ #define PARASAIL_FLAG_NW          (1 << 0) /*00000000000000000000000000000001*/