[ci run] trigger bulk run #1672
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name: Bulk branch | |
on: | |
push: | |
branches: | |
- bulk | |
jobs: | |
build-linux: | |
name: Bulk Linux Builds | |
if: "contains(github.event.head_commit.message, '[ci run]')" | |
runs-on: ubuntu-22.04 | |
strategy: | |
fail-fast: false | |
max-parallel: 6 | |
matrix: | |
runner: [0, 1, 2] # 3, 4, 5] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
# checkout as BiocondaBot in order to have the permission to push fail logs | |
token: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}} | |
- name: set git user | |
run: | | |
git config user.name BiocondaBot | |
git config user.email [email protected] | |
- name: set path | |
run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | |
- name: Fetch conda install script | |
run: | | |
wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh | |
- name: Set up bioconda-utils | |
run: bash install-and-set-up-conda.sh | |
- name: Configure conda | |
run: bash configure-conda.sh | |
- name: Build and upload | |
env: | |
ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
INVOLUCRO_AUTH: ${{ secrets.INVOLUCRO_AUTH }} | |
QUAY_OAUTH_TOKEN: ${{ secrets.QUAY_OAUTH_TOKEN }} | |
# Mimic circleci | |
OSTYPE: "linux-gnu" | |
CI: "true" | |
run: | | |
set -e | |
eval "$(conda shell.bash hook)" | |
conda activate bioconda | |
echo '============' | |
conda info --all | |
conda config --show-sources | |
python -c 'import bioconda_utils.utils as u ; import pathlib as p ; print(*(f"{f}:\n{p.Path(f).read_text()}" for f in u.load_conda_build_config().exclusive_config_files), sep="\n")' | |
echo '============' | |
bioconda-utils build recipes config.yml \ | |
--worker-offset ${{ matrix.runner }} --n-workers 3 \ | |
--docker --mulled-test --anaconda-upload --mulled-upload-target biocontainers \ | |
--lint --record-build-failures --skiplist-leafs \ | |
--exclude bioconda-repodata-patches # --subdag-depth 5 | |
conda clean -y --all | |
build-osx: | |
name: Bulk OSX-64 Builds | |
if: "contains(github.event.head_commit.message, '[ci run]')" | |
runs-on: macos-13 | |
strategy: | |
fail-fast: false | |
max-parallel: 3 | |
matrix: | |
runner: [0] # 1, 2] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
# checkout as BiocondaBot in order to have the permission to push fail logs | |
token: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}} | |
- name: set git user | |
run: | | |
git config user.name BiocondaBot | |
git config user.email [email protected] | |
- name: set path | |
run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | |
- name: Fetch conda install script | |
run: | | |
wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh | |
- name: Set up bioconda-utils | |
run: bash install-and-set-up-conda.sh | |
- name: Configure conda | |
run: bash configure-conda.sh | |
- name: Build and upload | |
env: | |
ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
INVOLUCRO_AUTH: ${{ secrets.INVOLUCRO_AUTH }} | |
QUAY_OAUTH_TOKEN: ${{ secrets.QUAY_OAUTH_TOKEN }} | |
# Mimic circleci | |
OSTYPE: "darwin" | |
CI: "true" | |
run: | | |
set -e | |
eval "$(conda shell.bash hook)" | |
conda activate bioconda | |
source common.sh | |
run_conda_forge_build_setup | |
echo '============' | |
conda info --all | |
conda config --show-sources | |
conda activate bioconda | |
python -c 'import bioconda_utils.utils as u ; import pathlib as p ; print(*(f"{f}:\n{p.Path(f).read_text()}" for f in u.load_conda_build_config().exclusive_config_files), sep="\n")' | |
echo '============' | |
bioconda-utils build recipes config.yml \ | |
--worker-offset ${{ matrix.runner }} --n-workers 1 \ | |
--lint --anaconda-upload --record-build-failures --skiplist-leafs \ | |
--exclude bioconda-repodata-patches # --subdag-depth 5 | |
conda clean -y --all | |
build-osx-arm: | |
name: Bulk OSX-ARM64 Builds | |
if: "contains(github.event.head_commit.message, '[ci run DISABLE ARM]')" | |
runs-on: macOS-14 # M1 | |
strategy: | |
fail-fast: false | |
max-parallel: 1 # GHA free plan allows 5 concurrent Mac runners total, we still need most on osx-64. | |
matrix: | |
runner: [0] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
# checkout as BiocondaBot in order to have the permission to push fail logs | |
token: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}} | |
- name: set git user | |
run: | | |
git config user.name BiocondaBot | |
git config user.email [email protected] | |
- name: set path | |
run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | |
- name: Fetch conda install script | |
run: | | |
wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh | |
- name: Set up bioconda-utils | |
run: bash install-and-set-up-conda.sh | |
- name: Configure conda | |
run: bash configure-conda.sh | |
- name: Build and upload | |
env: | |
ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
INVOLUCRO_AUTH: ${{ secrets.INVOLUCRO_AUTH }} | |
QUAY_OAUTH_TOKEN: ${{ secrets.QUAY_OAUTH_TOKEN }} | |
# Mimic circleci | |
OSTYPE: "darwin" | |
CI: "true" | |
run: | | |
set -xe | |
eval "$(conda shell.bash hook)" | |
conda activate bioconda | |
source common.sh | |
# Sets up OSX SDK | |
run_conda_forge_build_setup | |
echo '============' | |
conda info --all | |
conda config --show-sources | |
conda activate bioconda | |
python -c 'import bioconda_utils.utils as u ; import pathlib as p ; print(*(f"{f}:\n{p.Path(f).read_text()}" for f in u.load_conda_build_config().exclusive_config_files), sep="\n")' | |
echo '============' | |
bioconda-utils build recipes config.yml \ | |
--worker-offset ${{ matrix.runner }} --n-workers 1 \ | |
--lint --anaconda-upload --record-build-failures --skiplist-leafs \ | |
--exclude bioconda-repodata-patches | |
conda clean -y --all |