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102 Open 1,908 Closed
102 Open 1,908 Closed
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Issues list

How long does assigntTaxonomoy takes with UNITE database?
#2064 opened Nov 27, 2024 by sadia-marjia
Take too long time to runing Taxonomy using UNITE database
#2063 opened Nov 27, 2024 by Danyang1111
2
Error rates could not be estimated (this is usually because of very few reads). Error in getErrors(err, enforce = TRUE) : Error matrix is NULL.
#2062 opened Nov 23, 2024 by Yaping361
Running DADA2 on clusters with pool option -- run of memory
#2061 opened Nov 22, 2024 by emankhalaf
2
Long Run Time for Qiime DADA2 Paired-End Denoising
#2058 opened Nov 19, 2024 by zbaida-achraf
1
Error at mergePairs step: table(pairdf$forward, pairdf$reverse) : attempt to make a table with >= 2^31 elements
#2055 opened Nov 16, 2024 by Anto007
3
nbases argument ignored?
#2054 opened Nov 15, 2024 by hjarnek
4
DADA2 Error Rate Plots - is this okay?
#2052 opened Nov 13, 2024 by suminayeoh
1
General question about pseudo-pooling
#2047 opened Nov 1, 2024 by cjfields
1
Error estimating error rates and plotting quality profiles
#2045 opened Oct 23, 2024 by Guillermouceda
6
DADA2 ITS trimming question
#2044 opened Oct 22, 2024 by UniAlberta
4
How does a small database affect the taxonomic assignment?
#2023 opened Sep 18, 2024 by Fmicro23
1
truncLenKeep enhancement
#2020 opened Sep 15, 2024 by LukeLikesDirt
3
DADA2 analysis for two different platforms MISEQ and Novaseq -Merging of sequence table
#2018 opened Sep 13, 2024 by Jayakanthankk
3
Parameters optimal to produce COI exact variants.
#2015 opened Sep 10, 2024 by aimirza
4
Merged files, where should I start in the pipeline and how?
#2012 opened Sep 5, 2024 by seqlt
2
Different Illumina sequencing kits (v2 and v3) - preprocessing
#2011 opened Sep 4, 2024 by luizastein
3
Large variability in sequence lengths after merging paired reads
#2010 opened Sep 3, 2024 by alannajmcc16
1
Large amount of losses in read number during processing: PacBio Hifi reads
#2009 opened Aug 30, 2024 by HitMonk
4
Is filterAndTrim effect to NA results or because minBoot? What parameter setting ​​should be used appropriately?
#2008 opened Aug 30, 2024 by WP-SMILE
5
filterAndTrim
#2007 opened Aug 27, 2024 by AliciaBalbin
1
FilterAndTrim discards huge amount of reads with trunclen option
#2006 opened Aug 23, 2024 by sofiehn
9
learnErrors() on PacBio 16S very slow
#2005 opened Aug 22, 2024 by trawler-crawler
8
Incertae_sedis VS NA Taxonomic Assignment
#2004 opened Aug 22, 2024 by mya-darsan
1
about plotQualityProfile and derepFastq function
#2003 opened Aug 22, 2024 by dstrgcv
1
ProTip! Follow long discussions with comments:>50.