{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":3769753,"defaultBranch":"master","name":"abyss","ownerLogin":"bcgsc","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2012-03-19T23:13:39.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/2319317?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726090347.0","currentOid":""},"activityList":{"items":[{"before":"8c9545bf7c108dbab3b339eb496fdd653742cfd5","after":"d3a0c13013c4a727f0e3141a67b54c592538572d","ref":"refs/heads/master","pushedAt":"2024-09-11T20:01:53.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"prepare for release 2.3.9 (#483)\n\n* prepare for release 2.3.9\r\n\r\n* Update ChangeLog\r\n\r\nCo-authored-by: Lauren Coombe <lauren.e.coombe@gmail.com>\r\n\r\n---------\r\n\r\nCo-authored-by: Lauren Coombe <lauren.e.coombe@gmail.com>","shortMessageHtmlLink":"prepare for release 2.3.9 (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2520571628\" data-permission-text=\"Title is private\" data-url=\"https://github.com/bcgsc/abyss/issues/483\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/bcgsc/abyss/pull/483/hovercard\" href=\"https://github.com/bcgsc/abyss/pull/483\">#483</a>)"}},{"before":"89a974f816d4eb51781f70ba7e1c1b2ad6656368","after":"97134f1b6e216aca731251c6cd4999c5afac47a7","ref":"refs/heads/release_2.3.9","pushedAt":"2024-09-11T19:25:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"Update ChangeLog\n\nCo-authored-by: Lauren Coombe <lauren.e.coombe@gmail.com>","shortMessageHtmlLink":"Update ChangeLog"}},{"before":null,"after":"89a974f816d4eb51781f70ba7e1c1b2ad6656368","ref":"refs/heads/release_2.3.9","pushedAt":"2024-09-11T19:15:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"prepare for release 2.3.9","shortMessageHtmlLink":"prepare for release 2.3.9"}},{"before":"116a6bfa7f3e5b8f0b4d02f0d38045944347d7b9","after":"8c9545bf7c108dbab3b339eb496fdd653742cfd5","ref":"refs/heads/master","pushedAt":"2024-09-11T18:41:01.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"Free memory from allocating the algn struct (#482)\n\n* museq.c: free memory, add compile flags\r\n\r\n* remove wno compile flags\r\n\r\n* azure: specify gcc version for first compiler check\r\n\r\n* azure: remove -fuse-ld=lld flags","shortMessageHtmlLink":"Free memory from allocating the algn struct (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2520085102\" data-permission-text=\"Title is private\" data-url=\"https://github.com/bcgsc/abyss/issues/482\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/bcgsc/abyss/pull/482/hovercard\" href=\"https://github.com/bcgsc/abyss/pull/482\">#482</a>)"}},{"before":"80cfe6f08ad39fba7bfa39b0814abe7086f83599","after":"3767c38c71fc329f813eaa989be5ad46c3b71a60","ref":"refs/heads/manual_del","pushedAt":"2024-09-11T15:03:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"azure: remove -fuse-ld=lld flags","shortMessageHtmlLink":"azure: remove -fuse-ld=lld flags"}},{"before":"401a70a4e02e97766513233a727c9bcab90b8c9a","after":"ee53b8edb58cd49fc5ea474d67df395f5345573b","ref":"refs/heads/test_ci_manual_del","pushedAt":"2024-09-11T00:35:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"troubleshoot","shortMessageHtmlLink":"troubleshoot"}},{"before":"88aba4e26fa06dbd71be346e329df97df538729b","after":"401a70a4e02e97766513233a727c9bcab90b8c9a","ref":"refs/heads/test_ci_manual_del","pushedAt":"2024-09-11T00:24:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"troubleshooting","shortMessageHtmlLink":"troubleshooting"}},{"before":"3aab55fecdcc2396f69950d15d21d3714dbc15bf","after":"88aba4e26fa06dbd71be346e329df97df538729b","ref":"refs/heads/test_ci_manual_del","pushedAt":"2024-09-11T00:06:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"reinstall","shortMessageHtmlLink":"reinstall"}},{"before":"d3fc838ed5fd3de6c6aa7f7268a7e1dc7deede50","after":"3aab55fecdcc2396f69950d15d21d3714dbc15bf","ref":"refs/heads/test_ci_manual_del","pushedAt":"2024-09-10T23:59:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"troubleshooting","shortMessageHtmlLink":"troubleshooting"}},{"before":"63a5d1da38be88ca195a7a7288948c706cbf4ff4","after":"d3fc838ed5fd3de6c6aa7f7268a7e1dc7deede50","ref":"refs/heads/test_ci_manual_del","pushedAt":"2024-09-10T23:50:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Troubleshooting","shortMessageHtmlLink":"Troubleshooting"}},{"before":null,"after":"63a5d1da38be88ca195a7a7288948c706cbf4ff4","ref":"refs/heads/test_ci_manual_del","pushedAt":"2024-09-10T23:41:13.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Test","shortMessageHtmlLink":"Test"}},{"before":"995af9accf905278096e3d187a4dc177c373bb8b","after":"80cfe6f08ad39fba7bfa39b0814abe7086f83599","ref":"refs/heads/manual_del","pushedAt":"2024-09-10T21:37:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"azure: specify gcc version for first compiler check","shortMessageHtmlLink":"azure: specify gcc version for first compiler check"}},{"before":"17334bcf51847639706d29bb712d349d1eb86f16","after":"995af9accf905278096e3d187a4dc177c373bb8b","ref":"refs/heads/manual_del","pushedAt":"2024-09-10T20:55:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"remove wno compile flags","shortMessageHtmlLink":"remove wno compile flags"}},{"before":null,"after":"17334bcf51847639706d29bb712d349d1eb86f16","ref":"refs/heads/manual_del","pushedAt":"2024-09-10T16:34:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"museq.c: free memory, add compile flags","shortMessageHtmlLink":"museq.c: free memory, add compile flags"}},{"before":null,"after":"3f12e37836c33c3c3ab317ab03c4aace58c922cd","ref":"refs/heads/arm_ci","pushedAt":"2024-07-23T01:20:47.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Try osx-arm64 build","shortMessageHtmlLink":"Try osx-arm64 build"}},{"before":"5ca0108f592bb7239037dc72cdfe13c29ae0408b","after":null,"ref":"refs/heads/release_2.3.8","pushedAt":"2024-07-19T15:40:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"4906b9967854112619bbaad955aaf3b937526d3a","after":"116a6bfa7f3e5b8f0b4d02f0d38045944347d7b9","ref":"refs/heads/master","pushedAt":"2024-07-19T15:40:30.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Prepare for release v2.3.8 (#480)","shortMessageHtmlLink":"Prepare for release v2.3.8 (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2417322667\" data-permission-text=\"Title is private\" data-url=\"https://github.com/bcgsc/abyss/issues/480\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/bcgsc/abyss/pull/480/hovercard\" href=\"https://github.com/bcgsc/abyss/pull/480\">#480</a>)"}},{"before":null,"after":"5ca0108f592bb7239037dc72cdfe13c29ae0408b","ref":"refs/heads/release_2.3.8","pushedAt":"2024-07-18T20:04:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Prepare for release v2.3.8","shortMessageHtmlLink":"Prepare for release v2.3.8"}},{"before":"6548e04546dfc2239faee5b52fdb01dd31ed7995","after":"4906b9967854112619bbaad955aaf3b937526d3a","ref":"refs/heads/master","pushedAt":"2024-07-18T01:54:45.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jwcodee","name":"JW","path":"/jwcodee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34543031?s=80&v=4"},"commit":{"message":"Type changes required for LTO (#479)\n\n* disable deprecated error and change type\r\n\r\n* add tlo flags\r\n\r\n* azure: test export\r\n\r\n* Update azure-pipelines.yml\r\n\r\n* Update azure-pipelines.yml\r\n\r\n* Update azure-pipelines.yml\r\n\r\n* test dialign.h\r\n\r\n* azure: revert test changes\r\n\r\n* azure: test\r\n\r\n* azure: test no distcheck\r\n\r\n* azure: test flags\r\n\r\n* Update azure-pipelines.yml\r\n\r\n* azure: export path\r\n\r\n* Update azure-pipelines.yml\r\n\r\n* Makefile.am: remove lto flag\r\n\r\n* azure: revert test changes\r\n\r\n* azure: test mac with gcc14\r\n\r\n* azure: clang error test\r\n\r\n* azure: full test\r\n\r\n* azure: remove frozen compilers version\r\n\r\n* azure: install btllib via conda\r\n\r\n* CI fixes\r\n\r\n* Revert btllib version for gcc-8\r\n\r\n---------\r\n\r\nCo-authored-by: lcoombe <lauren.e.coombe@gmail.com>","shortMessageHtmlLink":"Type changes required for LTO (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2387272041\" data-permission-text=\"Title is private\" data-url=\"https://github.com/bcgsc/abyss/issues/479\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/bcgsc/abyss/pull/479/hovercard\" href=\"https://github.com/bcgsc/abyss/pull/479\">#479</a>)"}},{"before":"192e3684eb3801252aed1de0e82cc4cc7fcda916","after":null,"ref":"refs/heads/test_lto_ci","pushedAt":"2024-07-11T21:08:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"f4fd41af5a1e42873c6e4c418488cf2d0d25948a","after":"4a8c6e8da1cb6b59a7d230135e00cea87f6d5dac","ref":"refs/heads/tlo","pushedAt":"2024-07-11T19:37:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Revert btllib version for gcc-8","shortMessageHtmlLink":"Revert btllib version for gcc-8"}},{"before":"ad88f3dcdda638defd6d01e87a768eab6ae719b8","after":"f4fd41af5a1e42873c6e4c418488cf2d0d25948a","ref":"refs/heads/tlo","pushedAt":"2024-07-11T19:24:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"CI fixes","shortMessageHtmlLink":"CI fixes"}},{"before":"72f6743bd179ef191243692f0a2e528a22a9d9fe","after":"cd8d953013414e92f0ddf7a0210538d6b5fc986d","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T19:04:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Fix path to btllib","shortMessageHtmlLink":"Fix path to btllib"}},{"before":"dfcb8dbff2e24aef2331fc597ce6241c7d5b6e48","after":"72f6743bd179ef191243692f0a2e528a22a9d9fe","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T19:00:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update btllib version for linux gcc","shortMessageHtmlLink":"Update btllib version for linux gcc"}},{"before":"13354e14e74311524fd9c53bea6a172571da0eb1","after":"dfcb8dbff2e24aef2331fc597ce6241c7d5b6e48","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T18:45:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add in other clang versions with same llvm, libcxx downgrades","shortMessageHtmlLink":"Add in other clang versions with same llvm, libcxx downgrades"}},{"before":"f6faa4e0d9d04892473c8665836178e9e1fbcd63","after":"13354e14e74311524fd9c53bea6a172571da0eb1","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T18:36:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add distcheck","shortMessageHtmlLink":"Add distcheck"}},{"before":"da897f0929b500ccc8d01e30f75affe08b1d2ce0","after":"f6faa4e0d9d04892473c8665836178e9e1fbcd63","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T18:30:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Downgrade llvm and libcxx dependencies","shortMessageHtmlLink":"Downgrade llvm and libcxx dependencies"}},{"before":"6bb7269ff2ed6e7c95f2fe29ac53e0bde5797c0d","after":"da897f0929b500ccc8d01e30f75affe08b1d2ce0","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T01:23:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":"4b92fab5980a5066af1383cbd980f75ef86d5927","after":"6bb7269ff2ed6e7c95f2fe29ac53e0bde5797c0d","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T01:23:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"test","shortMessageHtmlLink":"test"}},{"before":"01f942c24347eca80510794feeb605684c50e8c9","after":"4b92fab5980a5066af1383cbd980f75ef86d5927","ref":"refs/heads/ci_tests","pushedAt":"2024-07-11T01:18:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"adjust boost path","shortMessageHtmlLink":"adjust boost path"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMVQyMDowMTo1My4wMDAwMDBazwAAAASznqaZ","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMVQyMDowMTo1My4wMDAwMDBazwAAAASznqaZ","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNy0xMVQwMToxODowNi4wMDAwMDBazwAAAAR8UOfg"}},"title":"Activity · bcgsc/abyss"}