update quantile computation in quantilegbm and quantilelgbm #213
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| name: uncoverml CI | |
| on: | |
| pull_request: | |
| branches: | |
| - 'master' | |
| push: | |
| branches: | |
| - '**' | |
| jobs: | |
| build: | |
| if: ${{ ! (contains(github.event.head_commit.message, 'ci skip') || contains(github.event.head_commit.message, 'skip ci'))}} | |
| runs-on: ubuntu-18.04 | |
| name: Python ${{ matrix.python }} | |
| strategy: | |
| matrix: | |
| include: | |
| - build: 1 | |
| python-version: "3.7" | |
| GDALVERSION: "3.0.2" | |
| PROJVERSION: "6.2.1" | |
| env: | |
| PIP_WHEEL_DIR: "/home/runner/.cache/pip/wheels" | |
| PIP_FIND_LINKS: "file:///home/runner/.cache/pip/wheels" | |
| GDALINST: "/home/runner/gdalinstall" | |
| GDALBUILD: "/home/runner/gdalbuild" | |
| GDALVERSION: ${{ matrix.GDALVERSION }} | |
| PROJINST: "/home/runner/gdalinstall" | |
| PROJBUILD: "/home/runner/projbuild" | |
| PROJVERSION: ${{ matrix.PROJVERSION }} | |
| PYTHONVERSION: ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache multiple paths | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| /home/runner/gdalinstall | |
| key: ${{ runner.os }}-cache-GDAL-${{ matrix.GDALVERSION }}-proj-${{ matrix.PROJVERSION }} | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Common set up ${{ matrix.python-version }} | |
| run: | | |
| sudo apt update | |
| sudo apt upgrade | |
| python -m pip install -U pip wheel | |
| - name: Install packages including openmpi | |
| if: env.PYTHONVERSION != '3.9' | |
| run: sudo apt install libhdf5-serial-dev libnetcdf13 libatlas-base-dev gfortran openmpi-bin libopenmpi-dev | |
| - name: Install packages except openmpi libraries | |
| if: env.PYTHONVERSION == '3.9' | |
| run: sudo apt install libhdf5-serial-dev libnetcdf13 libatlas-base-dev gfortran | |
| - name: Install proj ${{matrix.PROJVERSION}} | |
| run: | | |
| echo "PATH=$GDALINST/gdal-$GDALVERSION/bin:$PATH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$GDALINST/gdal-$GDALVERSION/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| source ./scripts/ci_proj_install.sh | |
| - name: Install GDAL ${{matrix.GDALVERSION}} | |
| run: | | |
| echo "GDAL_DATA=$GDALINST/gdal-$GDALVERSION/share/gdal" >> $GITHUB_ENV | |
| echo "PROJ_LIB=$GDALINST/gdal-$GDALVERSION/share/proj" >> $GITHUB_ENV | |
| echo "LDFLAGS=-L$GDALINST/gdal-$GDALVERSION/lib -Wl,-rpath,$GDALINST/gdal-$GDALVERSION/lib" >> $GITHUB_ENV | |
| source ./scripts/ci_gdal_install.sh | |
| - name: Python ${{ matrix.python-version }} with MPI | |
| if: env.PYTHONVERSION != '3.9' | |
| run: | | |
| pip install numpy==1.17.2 cython==0.29.13 | |
| pip install -e .[dev] | |
| rm -rf uncover_ml.egg-info # remove the local egg | |
| echo "PYTHONPATH=$(pwd):$PYTHONPATH" >> $GITHUB_ENV | |
| - name: Test uncoverml in Python ${{ matrix.python-version }} with MPI | |
| if: env.PYTHONVERSION != '3.9' | |
| run: | | |
| make test |