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@barricklab

Barrick Lab

Barrick Lab at the University of Texas at Austin

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  1. breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a com…

    C++ 159 21

  2. LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 16 5

  3. ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 22 9

  4. pLannotate Public

    Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    Python 13 4

  5. brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    Python 3 1

Repositories

Showing 10 of 49 repositories
  • brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    Python 3 MIT 1 1 0 Updated Mar 18, 2025
  • seabreeze Public Forked from ira-zibbu/seabreeze-ltee-analysis

    seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

    Python 0 MIT 2 0 0 Updated Mar 17, 2025
  • breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

    C++ 159 GPL-2.0 21 38 0 Updated Mar 15, 2025
  • barricklab Public

    General data analysis spreadsheets and scripts

    Python 4 3 0 0 Updated Mar 14, 2025
  • LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 16 CC0-1.0 5 1 0 Updated Mar 11, 2025
  • ltee-sv-seabreeze Public Forked from barricklab/seabreeze

    Modified version of seabreeze for analysis of LTEE data

    Python 0 MIT 2 0 0 Updated Feb 24, 2025
  • genomediff-python Public Forked from rohanmaddamsetti/genomediff-python

    GenomeDiff (*.gd) file parser for Python

    Python 0 MIT 7 0 1 Updated Feb 11, 2025
  • cryptkeeper Public

    Tool for visualizing unintentional bacterial gene expression from a DNA sequence

    Python 2 GPL-3.0 0 0 0 Updated Jan 31, 2025
  • RhoTermPredict Public Forked from MarcoDiSalvo90/RhoTermPredict
    Python 0 AGPL-3.0 11 0 0 Updated Jan 31, 2025
  • breseq-ext-cnv Public

    breseq copy number variation extension

    Python 0 GPL-2.0 0 0 0 Updated Jan 15, 2025
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