GitHub - barizona/treeshrink

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
25_unpruned_unrooted_Ecoli_trees		25_unpruned_unrooted_Ecoli_trees
output_v1		output_v1
readme		readme
v1_output_screen		v1_output_screen

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v1
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST101_unpruned.nwk -O output_v1 -O ST101_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST10_unpruned.nwk -O output_v1 -O ST10_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST117_unpruned.nwk -O output_v1 -O ST117_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST11_unpruned.nwk -O output_v1 -O ST11_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST127_unpruned.nwk -O output_v1 -O ST127_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST131_unpruned.nwk -O output_v1 -O ST131_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST155_unpruned.nwk -O output_v1 -O ST155_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST156_unpruned.nwk -O output_v1 -O ST156_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST167_unpruned.nwk -O output_v1 -O ST167_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST16_unpruned.nwk -O output_v1 -O ST16_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST21_unpruned.nwk -O output_v1 -O ST21_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST2332_unpruned.nwk -O output_v1 -O ST2332_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST29_unpruned.nwk -O output_v1 -O ST29_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST32_unpruned.nwk -O output_v1 -O ST32_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST38_unpruned.nwk -O output_v1 -O ST38_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST405_unpruned.nwk -O output_v1 -O ST405_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST410_unpruned.nwk -O output_v1 -O ST410_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST48_unpruned.nwk -O output_v1 -O ST48_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST58_unpruned.nwk -O output_v1 -O ST58_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST648_unpruned.nwk -O output_v1 -O ST648_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST655_unpruned.nwk -O output_v1 -O ST655_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST69_unpruned.nwk -O output_v1 -O ST69_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST73_unpruned.nwk -O output_v1 -O ST73_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST88_unpruned.nwk -O output_v1 -O ST88_treeshrink
run_treeshrink.py -t 25_unpruned_unrooted_Ecoli_trees/ST95_unpruned.nwk -O output_v1 -O ST95_treeshrink
mv 25_unpruned_unrooted_Ecoli_trees/ST* output_v1/
mv output_v1/ST*_unpruned.nwk 25_unpruned_unrooted_Ecoli_trees/