set logging in repo setup

pkg/setup/setup.go

@@ -9,6 +9,7 @@ import (
 
 	"github.com/bacalhau-project/bacalhau/pkg/config"
 	"github.com/bacalhau-project/bacalhau/pkg/config/types"
+	"github.com/bacalhau-project/bacalhau/pkg/logger"
 	"github.com/bacalhau-project/bacalhau/pkg/repo/migrations"
 
 	"github.com/bacalhau-project/bacalhau/pkg/repo"
@@ -24,6 +25,9 @@ func SetupMigrationManager() (*repo.MigrationManager, error) {
 
 // SetupBacalhauRepo ensures that a bacalhau repo and config exist and are initialized.
 func SetupBacalhauRepo(cfg types.Bacalhau) (*repo.FsRepo, error) {
+	if err := logger.ParseAndConfigureLogging(cfg.Logging.Mode, cfg.Logging.Level); err != nil {
+		return nil, fmt.Errorf("failed to configure logging: %w", err)
+	}
 	migrationManger, err := SetupMigrationManager()
 	if err != nil {
 		return nil, fmt.Errorf("failed to create migration manager: %w", err)