Small documentation fix

R/agree_np.R

@@ -29,7 +29,9 @@
 #' data('reps')
 #' agree_np(x = "x", y = "y", id = "id", data = reps, delta = 2)
 #' @section References:
-#' Bland, J. M., & Altman, D. G. (1999). Measuring agreement in method comparison studies. In Statistical Methods in Medical Research (Vol. 8, Issue 2, pp. 135–160). SAGE Publications. <https://doi.org/10.1177/096228029900800204>
+#' Bland, J. M., & Altman, D. G. (1999). Measuring agreement in method comparison studies. In Statistical Methods in Medical Research (Vol. 8, Issue 2, pp. 135–160).
+#' SAGE Publications.
+#' \doi{10.1177/096228029900800204}
 #' @importFrom stats binom.test binomial confint glm median setNames quantile
 #' @import quantreg
 #' @importFrom tidyselect all_of

R/agree_test.R

@@ -34,7 +34,9 @@
 #' agree_test(x=reps$x, y=reps$y, delta = 2)
 #'
 #' @references
-#' Shieh (2019). Assessing Agreement Between Two Methods of Quantitative Measurements: Exact Test Procedure and Sample Size Calculation, Statistics in Biopharmaceutical Research, <https://doi.org/10.1080/19466315.2019.1677495>
+#' Shieh (2019). Assessing Agreement Between Two Methods of Quantitative Measurements: Exact Test Procedure and Sample Size Calculation,
+#' Statistics in Biopharmaceutical Research,
+#' \doi{10.1080/19466315.2019.1677495}
 #'
 #' Bland, J. M., & Altman, D. G. (1999). Measuring agreement in method comparison studies. Statistical methods in medical research, 8(2), 135-160.
 #'

R/blandPowerCurve.R

@@ -13,7 +13,8 @@
 
 #' @return A dataframe is returned containing the power analysis results. The results can then be plotted with the plot.powerCurve function.
 #' @references
-#' Lu, M. J., et al. (2016). Sample Size for Assessing Agreement between Two Methods of Measurement by Bland-Altman Method. The international journal of biostatistics, 12(2), <https://doi.org/10.1515/ijb-2015-0039>
+#' Lu, M. J., et al. (2016). Sample Size for Assessing Agreement between Two Methods of Measurement by Bland-Altman Method. The international journal of biostatistics, 12(2),
+#' \doi{10.1515/ijb-2015-0039}
 #' @examples
 #' \donttest{
 #' powerCurve <- blandPowerCurve(samplesizes = seq(10, 200, 1),

R/loa_lme.R

@@ -24,7 +24,10 @@
 #'   - `call`: The matched call.
 #'
 #' @references
-#' Parker, R. A., Weir, C. J., Rubio, N., Rabinovich, R., Pinnock, H., Hanley, J., McLoughan, L., Drost, E.M., Mantoani, L.C., MacNee, W., & McKinstry, B. (2016). "Application of mixed effects limits of agreement in the presence of multiple sources of variability: exemplar from the comparison of several devices to measure respiratory rate in COPD patients". PLOS One, 11(12), e0168321. <https://doi.org/10.1371/journal.pone.0168321>
+#' Parker, R. A., Weir, C. J., Rubio, N., Rabinovich, R., Pinnock, H., Hanley, J., McLoughan, L., Drost, E.M., Mantoani, L.C., MacNee, W., & McKinstry, B. (2016).
+#' "Application of mixed effects limits of agreement in the presence of multiple sources of variability: exemplar from the comparison of several devices to measure respiratory rate in COPD patients".
+#' PLOS One, 11(12), e0168321.
+#' \doi{10.1371/journal.pone.0168321}
 #' @importFrom stats qnorm as.formula na.omit coef df predict rnorm runif
 #' @importFrom magrittr %>%
 #' @importFrom dplyr select rename

R/loa_mixed.R

@@ -28,7 +28,8 @@
 #'   - `agree.level`: Returned as input.
 #'
 #' @references
-#' Parker, R. A., Weir, C. J., Rubio, N., Rabinovich, R., Pinnock, H., Hanley, J., McLoughan, L., Drost, E.M., Mantoani, L.C., MacNee, W., & McKinstry, B. (2016). "Application of mixed effects limits of agreement in the presence of multiple sources of variability: exemplar from the comparison of several devices to measure respiratory rate in COPD patients". Plos One, 11(12), e0168321. <https://doi.org/10.1371/journal.pone.0168321>
+#' Parker, R. A., Weir, C. J., Rubio, N., Rabinovich, R., Pinnock, H., Hanley, J., McLoughan, L., Drost, E.M., Mantoani, L.C., MacNee, W., & McKinstry, B. (2016). "Application of mixed effects limits of agreement in the presence of multiple sources of variability: exemplar from the comparison of several devices to measure respiratory rate in COPD patients". Plos One, 11(12), e0168321.
+#' \doi{10.1371/journal.pone.0168321}
 #' @importFrom stats qnorm as.formula na.omit
 #' @importFrom magrittr %>%
 #' @importFrom dplyr select rename

cran-comments.md

@@ -1,2 +1,3 @@
 # Comments
 
+- doi URLs replaced with \doi as requested.