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Statistical models of liquids
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alexei-matveev/bgy3d
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FIXME: need some minimal documentation --- I myself forget the basic usage after a couple of weeks. Example usage: a) Compute solvation energy by 1D-RISM specifying the names of the solvent and solute molecules to be picked from the hard-wired database: ./guile/runbgy.scm energy \ --norm-tol 1e-14 --dielectric 78.4 \ --rho 0.0333295 --beta 1.6889 \ --L 160 --N 4096 \ --solvent "water, PR-SPC/E" --solute "water, PR-SPC/E" This should give a number close to -7.869294 kcal. b) Compute solvation energy by 3D-RISM for solute and solvent from the database using the solvent susceptibility from a 1D-RISM calculation: mpiexec -n 8 ./guile/runbgy.scm energy \ --norm-tol 1e-14 --dielectric 78.4 \ --rho 0.0333295 --beta 1.6889 \ --L 10 --N 96 \ --solvent "water, PR-SPC/E" --solute "water, PR-SPC/E" \ --hnc This should give you a number close to -6.349052 kcal (look for the "mu =" lines in the output). If you supply --no-renorm flag in addition you should get -6.297170 kcal as in earlier versions. For solutes without charged sites there should be no visible difference. c) Compute self-interaction energy of an MM solute: ./guile/runbgy.scm self-energy "uranyl, 5w, pcm"
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