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[DOC] Shapelet transform notebook #2046

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[DOC] Shapelet transform notebook #2046

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Commits on Aug 8, 2024

  1. Initial notebook structure

    @IRKnyazev
    IRKnyazev committed Aug 8, 2024
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  2. SAST only works on univariate - will need different dataset

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  3. made notebook framework up to viz

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  4. collected information for gunpoint dataset

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  5. no longer want to explore the default transformer params, rather use … 

    …the same params across them where possible
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  6. generated viz for gunpoint (not looking as expected atm)

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Commits on Aug 9, 2024

  1. grouped the graph viz more clearly

    @IRKnyazev
    IRKnyazev committed Aug 9, 2024
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  2. visualising all shapelets on one graph

    @IRKnyazev
    IRKnyazev committed Aug 9, 2024
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  3. cleaned up and reordered

    @IRKnyazev
    IRKnyazev committed Aug 9, 2024
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  4. Time Series Data On Graph

    @Moonzyyy
    Moonzyyy committed Aug 9, 2024
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  5. Extended daniele's graph to be one for each class

    @IRKnyazev
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  6. Added notebook plan

    @IRKnyazev
    IRKnyazev committed Aug 9, 2024
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  7. showing pandas head for each transform - need descriptions

    @IRKnyazev
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  8. few correction, pushing for daniele

    @IRKnyazev
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  9. changed wrong docstring param naming from classifier to estimator for… 

    … consistency
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  10. Made RF classifier for each transform to rank shapelets

    @IRKnyazev
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  11. Addition of RidgeClassifierCV

    @Moonzyyy
    Moonzyyy committed Aug 9, 2024
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  12. Made RF classifier for each transform to rank shapelets

    @IRKnyazev
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  13. Changes from random state to seed for SAST

    @Moonzyyy
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  14. push

    @Moonzyyy
    Moonzyyy committed Aug 9, 2024
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Commits on Aug 11, 2024

  1. found a good random seed for shapelet gen

    @IRKnyazev
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  2. making new branch for a quick PR

    @IRKnyazev
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  3. plotting shapelets by class

    @IRKnyazev
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  4. showing best and worst shapelet for a class using rccv

    @IRKnyazev
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  5. trying to set up dev version

    @IRKnyazev
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  6. Merge branch 'aeon-toolkit:main' into shapelet_transform_nb

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  7. was thinking about worst shapelets incorrectly this whole time

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Commits on Aug 12, 2024

  1. gen best and worst shapelet for each class - RST

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  2. shapelet attribute is completely different in rdst

    @IRKnyazev
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  3. can't access shapelet start point, making seperate PR for this

    @IRKnyazev
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  4. Merge branch 'main' into shapelet_transform_nb

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  5. notebook command for reloading aeon

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  6. Merge branch 'main' into shapelet_transform_nb

    @IRKnyazev
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  7. local changes can now be seen in nb

    @IRKnyazev
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  8. added shapelet startpos (wont commit those changes tho)

    @IRKnyazev
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  9. added startpos to shapelets list

    @IRKnyazev
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  10. added docstring for startpoints

    @IRKnyazev
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  11. Merge branch 'rdst_startpos' into shapelet_transform_nb

    @IRKnyazev
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  12. changed startpos vals to int32

    @IRKnyazev
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  13. Merge branch 'rdst_startpos' into shapelet_transform_nb

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  14. plotting dilated shapelets!

    @IRKnyazev
    IRKnyazev committed Aug 12, 2024
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Commits on Aug 13, 2024

  1. not using both classifers for remaining transforms

    @IRKnyazev
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  2. plotting dilated shapelets split into classes

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    IRKnyazev committed Aug 13, 2024
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Commits on Aug 14, 2024

  1. continued work on rdst

    @IRKnyazev
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  2. Merge branch 'main' into shapelet_transform_nb

    @IRKnyazev
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  3. added dilation legend to RDST shapelet plot

    @IRKnyazev
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  4. _get_shp_importance handles RDST weirdly

    @IRKnyazev
    IRKnyazev committed Aug 14, 2024
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  5. visualise best shapelet one class works wrong for rdst - making issue… 

    … and PR
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  6. dont need best and worst for each class as theyre mirrors

    @IRKnyazev
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  7. giving RDST same length param as RST

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Commits on Aug 20, 2024

  1. Merge branch 'aeon-toolkit:main' into shapelet_transform_nb

    @IRKnyazev
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  2. merge

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  3. Merge branch 'shapelet_transform_nb' of https://github.com/IRKnyazev/… 

    …aeon into shapelet_transform_nb
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Commits on Aug 21, 2024

  1. trying to plot the shapelets extracted with SAST

    @IRKnyazev
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  2. adding analysis & trying to understand SAST

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Commits on Aug 22, 2024

  1. plotted top 10 shapelets sast without start pos

    @IRKnyazev
    IRKnyazev committed Aug 22, 2024
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  2. plotting SAST shapelets and understanding their roots

    @IRKnyazev
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  3. using original dast attribute for source ts

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  4. using original dast attribute for source ts

    @IRKnyazev
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  5. Merge branch 'shapelet_transform_nb' of https://github.com/IRKnyazev/… 

    …aeon into shapelet_transform_nb
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Commits on Aug 23, 2024

  1. generated all figures for notebook

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    IRKnyazev committed Aug 23, 2024
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  2. formalising notebook & adding analysis

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  3. added notes from SAST paper

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  4. added notes from rdst

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Commits on Aug 26, 2024

  1. almost done ST analysis, trying to make sense of importance

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Commits on Aug 27, 2024

  1. changed rccv to logistic regression which is easier to interpret

    @IRKnyazev
    IRKnyazev committed Aug 27, 2024
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  2. finished with RST analysis

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    IRKnyazev committed Aug 27, 2024
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  3. my label encoding understanding for STC is wrong

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Commits on Aug 28, 2024

  1. STC and RDST graphs and classes make sense - issue2016

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  2. writing analysis of STC and RDST graphs

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Commits on Aug 29, 2024

  1. first draft of notebook done

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    IRKnyazev committed Aug 29, 2024
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Commits on Sep 4, 2024

  1. article 1 for medium

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Commits on Sep 5, 2024

  1. article 3 for medium

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  2. article 2 for medium

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Commits on Sep 6, 2024

  1. medium article 4

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Commits on Sep 11, 2024

  1. summary of transforms

    @IRKnyazev
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  2. Merge branch 'aeon-toolkit:main' into shapelet_transform_nb

    @IRKnyazev
    IRKnyazev committed Sep 11, 2024
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  3. Notebok draft ready for review

    @IRKnyazev
    IRKnyazev committed Sep 11, 2024
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