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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 158 32

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 77 24

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 96 27

  4. Hotspot Hotspot Public

    Python 90 14

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

Repositories

Showing 10 of 62 repositories
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 47 BSD-3-Clause 11 14 3 Updated Oct 30, 2024
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 36 BSD-3-Clause 7 8 2 Updated Oct 28, 2024
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 1 Updated Oct 28, 2024
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 25, 2024
  • Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    YosefLab/Compass’s past year of commit activity
    Python 96 BSD-3-Clause 27 49 2 Updated Oct 25, 2024
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    YosefLab/Cassiopeia’s past year of commit activity
    Python 77 MIT 24 20 (3 issues need help) 7 Updated Oct 24, 2024
  • scone Public
    YosefLab/scone’s past year of commit activity
    R 53 12 31 1 Updated Oct 16, 2024
  • yoseflab.github.io Public
    YosefLab/yoseflab.github.io’s past year of commit activity
    JavaScript 3 MIT 8 0 0 Updated Oct 16, 2024
  • mrvi-reproducibility Public

    Nextflow pipeline for MrVI pipelines

    YosefLab/mrvi-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 9 3 Updated Oct 10, 2024
  • mrvi Public archive

    Multi-resolution Variational Inference

    YosefLab/mrvi’s past year of commit activity
    Python 4 BSD-3-Clause 0 4 0 Updated Oct 9, 2024
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