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1. phenotypic_profiling phenotypic_profiling Public

   Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles

   Jupyter Notebook 2 3

2. nf1_schwann_cell_painting_data nf1_schwann_cell_painting_data Public

   This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

   Jupyter Notebook 5 5

3. pyroptosis_signature_image_profiling pyroptosis_signature_image_profiling Public

   This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

   Jupyter Notebook 3 3

4. coSMicQC coSMicQC Public

   Single cell Morphology Quality Control (coSMicQC)

   Python 7 3

5. predicting-cell-injury-compounds predicting-cell-injury-compounds Public

   Processing cell-injury profiles using Pycytominer to generate selected features profiles for training a multi-class regression model to identify cellular injury.

   Jupyter Notebook 1 2

6. CPBS7601 CPBS7601 Public

   Course on computing skills in biomedical informatics

   Jupyter Notebook 9