…nality

…it direction

…cplPlot-output

142 added level 6 flags to tcplPlot output by boolean flag

147 cleaned up mc6 flag descriptions

128 changed export_ready parameter default to FALSE

149 removed lvl parameter from tcplPlot, assigned by type now

…ata-inclusion

60 remove subset by wllt in mc4.R

148 add y axis scaling

* updated docs

* added github to buildignore

* added documentation for invitrodb_dd data file

* updated version number

* fixes variable binding note

* moved vdiffr from imports to suggests since it is only used in tests and not required to use the package normally

* added default multi for old style plots

* accepted and resolved minor snapshot test difference based on testing environment

* updated news and cran-comments

* added additional rhub to cran comments

…SEPA/CompTox-ToxCast-tcpl into 92-update-tcplPlot-sc-plotting

…s can exist

5 add padilla phase iii sc2 mthds and fix spid character string call

This is an outstanding pull request that could have been merged since data has been processed successfully

…r-mthds

165 update the model types in ow mc5 methods for plotting

… effect

…ction

…lot-sc-plotting

92 update tcpl plot sc plotting

…r-mthds

165 fix for = error on build

This reverts commit 5fac9a9, reversing
changes made to 8f8a646.

This reverts commit f91399b.

Merge compare feature into main plotting branch

* removed logging at level 3 and unlogging at levels 4 and 5

* resoliving merge conflict

* removed unlogging from plotting

* updated logc to conc for pipelining through level 5

* updated logc to conc in plotting

* updated mc3_methods to use conc instead of logc

* updated load

* updated mc5 for logc_min to conc_min

* updated level 6 files for conc compatibility

* removed null concs from level 4 and added warning

…ls and throw error (#181)

* changed tcplloaddata for sc1 from logc to conc

* specify sc1.conc in load data

…g errors

…(max_tmp)

Update tcpl plot - 7 tickets

* 173 start new load scheme

* 173 improved tcplLoadData to be flexible to any version of invitrodb

* 173 added schema check for lvls 4+5 add.fld

* created overwrite method for osd so that bmr == coff and removed unnecessary sql statement from mc5

* removed ow from mc5 method as that is only applied after hitcalling

* added if statement to check for osd_coff_bmr method and to overwrite osd right before hitcalling

* removed bug where loec.coff copied code was left in osd codeblock

* changed osd value to all_onesd to match what is loaded during tcplloaddata

* pivot mc4 dat to long format to fit how tcplfit2 nesting is required

* initialize overwrite_osd value

…o-tcplLoadData-update

204 fixed tcplLoadData space bug and tcplPlot order bug

…n mc5 hitcalling

…errfun

Could not assume that errfun would be returned (ie using the main/CRAN version of tcplfit2 before errfun updates are released)

…hods

163 create single direction sc methods

…cessing-error

207 solve mutate error, added errfun to params