Update manifest files

TuringLang · Sep 30, 2023 · d230d9f · d230d9f
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diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml
diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml
diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml
diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml
diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml
diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml
diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml
diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml
diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml
diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml
diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml
diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml
diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml
diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml
diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml
diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml
@@ -22,9 +22,9 @@ weakdeps = ["ChainRulesCore", "Test"]
 
 [[deps.AbstractGPs]]
 deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"]
-git-tree-sha1 = "10feade61b071ee3f8be0638cbe0a0050eceb57c"
+git-tree-sha1 = "6e5e13c57dbfdedddbc3ef727586d8ee0703d50a"
 uuid = "99985d1d-32ba-4be9-9821-2ec096f28918"
-version = "0.5.18"
+version = "0.5.19"
 
 [[deps.AbstractMCMC]]
 deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"]
@@ -435,9 +435,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
 deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "938fe2981db009f531b6332e31c58e9584a2f9bd"
+git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.100"
+version = "0.25.102"
 weakdeps = ["ChainRulesCore", "DensityInterface"]
 
     [deps.Distributions.extensions]
@@ -446,9 +446,9 @@ weakdeps = ["ChainRulesCore", "DensityInterface"]
 
 [[deps.DistributionsAD]]
 deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"]
-git-tree-sha1 = "975de103eb2175cf54bf14b15ded2c68625eabdf"
+git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e"
 uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c"
-version = "0.6.52"
+version = "0.6.53"
 
     [deps.DistributionsAD.extensions]
     DistributionsADForwardDiffExt = "ForwardDiff"
@@ -806,9 +806,9 @@ version = "0.6.7"
 
 [[deps.KernelFunctions]]
 deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"]
-git-tree-sha1 = "d7f3c99f7b00e36bdb6d47f5796eff9087327771"
+git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f"
 uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
-version = "0.10.56"
+version = "0.10.57"
 
 [[deps.LAME_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -824,15 +824,15 @@ version = "3.0.0+1"
 
 [[deps.LLVM]]
 deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
-git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c"
+git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "6.2.1"
+version = "6.3.0"
 
 [[deps.LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa"
+git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.25+0"
+version = "0.0.26+0"
 
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1170,9 +1170,9 @@ version = "0.5.5+0"
 
 [[deps.Optimisers]]
 deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "c1fc26bab5df929a5172f296f25d7d08688fd25b"
+git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5"
 uuid = "3bd65402-5787-11e9-1adc-39752487f4e2"
-version = "0.2.20"
+version = "0.3.1"
 
 [[deps.Opus_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1410,19 +1410,21 @@ version = "0.4.0+0"
 
 [[deps.Roots]]
 deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"]
-git-tree-sha1 = "ff42754a57bb0d6dcfe302fd0d4272853190421f"
+git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e"
 uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
-version = "2.0.19"
+version = "2.0.20"
 
     [deps.Roots.extensions]
     RootsForwardDiffExt = "ForwardDiff"
     RootsIntervalRootFindingExt = "IntervalRootFinding"
     RootsSymPyExt = "SymPy"
+    RootsSymPyPythonCallExt = "SymPyPythonCall"
 
     [deps.Roots.weakdeps]
     ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
     IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807"
     SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6"
+    SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c"
 
 [[deps.RuntimeGeneratedFunctions]]
 deps = ["ExprTools", "SHA", "Serialization"]
@@ -1535,9 +1537,9 @@ version = "0.1.15"
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
-git-tree-sha1 = "d5fb407ec3179063214bc6277712928ba78459e2"
+git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.6.4"
+version = "1.6.5"
 weakdeps = ["Statistics"]
 
     [deps.StaticArrays.extensions]
@@ -1567,9 +1569,9 @@ version = "1.7.0"
 
 [[deps.StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4"
+git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.34.0"
+version = "0.34.2"
 
 [[deps.StatsFuns]]
 deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
@@ -1649,9 +1651,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[deps.Tracker]]
 deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"]
-git-tree-sha1 = "92364c27aa35c0ee36e6e010b704adaade6c409c"
+git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd"
 uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
-version = "0.2.26"
+version = "0.2.27"
 weakdeps = ["PDMats"]
 
     [deps.Tracker.extensions]
@@ -1796,9 +1798,9 @@ version = "1.6.1"
 
 [[deps.XML2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
-git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4"
+git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.10.4+0"
+version = "2.11.5+0"
 
 [[deps.XSLT_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]