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Update manifest files
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@yebai
yebai authored Oct 7, 2023
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343 changes: 215 additions & 128 deletions tutorials/00-introduction/Manifest.toml
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343 changes: 215 additions & 128 deletions tutorials/01-gaussian-mixture-model/Manifest.toml
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373 changes: 235 additions & 138 deletions tutorials/02-logistic-regression/Manifest.toml
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350 changes: 217 additions & 133 deletions tutorials/03-bayesian-neural-network/Manifest.toml
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343 changes: 215 additions & 128 deletions tutorials/04-hidden-markov-model/Manifest.toml
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377 changes: 237 additions & 140 deletions tutorials/05-linear-regression/Manifest.toml
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336 changes: 211 additions & 125 deletions tutorials/06-infinite-mixture-model/Manifest.toml
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373 changes: 235 additions & 138 deletions tutorials/07-poisson-regression/Manifest.toml
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363 changes: 230 additions & 133 deletions tutorials/08-multinomial-logistic-regression/Manifest.toml
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419 changes: 259 additions & 160 deletions tutorials/09-variational-inference/Manifest.toml
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536 changes: 323 additions & 213 deletions tutorials/10-bayesian-differential-equations/Manifest.toml
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351 changes: 219 additions & 132 deletions tutorials/11-probabilistic-pca/Manifest.toml
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379 changes: 238 additions & 141 deletions tutorials/12-gplvm/Manifest.toml
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343 changes: 215 additions & 128 deletions tutorials/13-seasonal-time-series/Manifest.toml
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214 changes: 120 additions & 94 deletions tutorials/14-minituring/Manifest.toml
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83 changes: 44 additions & 39 deletions tutorials/15-gaussian-processes/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -22,9 +22,9 @@ weakdeps = ["ChainRulesCore", "Test"]

[[deps.AbstractGPs]]
deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"]
git-tree-sha1 = "10feade61b071ee3f8be0638cbe0a0050eceb57c"
git-tree-sha1 = "6e5e13c57dbfdedddbc3ef727586d8ee0703d50a"
uuid = "99985d1d-32ba-4be9-9821-2ec096f28918"
version = "0.5.18"
version = "0.5.19"

[[deps.AbstractMCMC]]
deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"]
Expand Down Expand Up @@ -231,9 +231,9 @@ version = "0.5.1"

[[deps.ChainRules]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
git-tree-sha1 = "dbeca245b0680f5393b4e6c40dcead7230ab0b3b"
git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.54.0"
version = "1.55.0"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
Expand Down Expand Up @@ -421,12 +421,13 @@ version = "1.15.1"

[[deps.Distances]]
deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9"
git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
version = "0.10.9"
weakdeps = ["SparseArrays"]
version = "0.10.10"
weakdeps = ["ChainRulesCore", "SparseArrays"]

[deps.Distances.extensions]
DistancesChainRulesCoreExt = "ChainRulesCore"
DistancesSparseArraysExt = "SparseArrays"

[[deps.Distributed]]
Expand All @@ -435,9 +436,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[deps.Distributions]]
deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "938fe2981db009f531b6332e31c58e9584a2f9bd"
git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.100"
version = "0.25.102"
weakdeps = ["ChainRulesCore", "DensityInterface"]

[deps.Distributions.extensions]
Expand All @@ -446,9 +447,9 @@ weakdeps = ["ChainRulesCore", "DensityInterface"]

[[deps.DistributionsAD]]
deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"]
git-tree-sha1 = "975de103eb2175cf54bf14b15ded2c68625eabdf"
git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e"
uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c"
version = "0.6.52"
version = "0.6.53"

[deps.DistributionsAD.extensions]
DistributionsADForwardDiffExt = "ForwardDiff"
Expand Down Expand Up @@ -549,9 +550,9 @@ version = "3.3.10+0"

[[deps.FilePathsBase]]
deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"]
git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12"
git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa"
uuid = "48062228-2e41-5def-b9a4-89aafe57970f"
version = "0.9.20"
version = "0.9.21"

[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
Expand Down Expand Up @@ -806,9 +807,9 @@ version = "0.6.7"

[[deps.KernelFunctions]]
deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"]
git-tree-sha1 = "d7f3c99f7b00e36bdb6d47f5796eff9087327771"
git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f"
uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
version = "0.10.56"
version = "0.10.57"

[[deps.LAME_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -824,15 +825,15 @@ version = "3.0.0+1"

[[deps.LLVM]]
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c"
git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "6.2.1"
version = "6.3.0"

[[deps.LLVMExtra_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa"
git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2"
uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
version = "0.0.25+0"
version = "0.0.26+0"

[[deps.LLVMOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1013,9 +1014,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[deps.LoggingExtras]]
deps = ["Dates", "Logging"]
git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91"
git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.0.2"
version = "1.0.3"

[[deps.MCMCChains]]
deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"]
Expand All @@ -1025,9 +1026,9 @@ version = "6.0.3"

[[deps.MCMCDiagnosticTools]]
deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"]
git-tree-sha1 = "3e6db72c2ab9cadfa3278ff388473a01fc0cfb9d"
git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7"
uuid = "be115224-59cd-429b-ad48-344e309966f0"
version = "0.3.5"
version = "0.3.7"

[[deps.MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1093,18 +1094,20 @@ version = "2022.10.11"

[[deps.NNlib]]
deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"]
git-tree-sha1 = "6e4e90c2e2ef091ef50b91af65fa4bb09c3d0728"
git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e"
uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
version = "0.9.6"
version = "0.9.7"

[deps.NNlib.extensions]
NNlibAMDGPUExt = "AMDGPU"
NNlibCUDACUDNNExt = ["CUDA", "cuDNN"]
NNlibCUDAExt = "CUDA"
NNlibEnzymeCoreExt = "EnzymeCore"

[deps.NNlib.weakdeps]
AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"

[[deps.NaNMath]]
Expand Down Expand Up @@ -1170,9 +1173,9 @@ version = "0.5.5+0"

[[deps.Optimisers]]
deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "c1fc26bab5df929a5172f296f25d7d08688fd25b"
git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5"
uuid = "3bd65402-5787-11e9-1adc-39752487f4e2"
version = "0.2.20"
version = "0.3.1"

[[deps.Opus_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -1192,9 +1195,9 @@ version = "10.42.0+0"

[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "bf6085e8bd7735e68c210c6e5d81f9a6fe192060"
git-tree-sha1 = "fcf8fd477bd7f33cb8dbb1243653fb0d415c256c"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.19"
version = "0.11.25"

[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
Expand Down Expand Up @@ -1410,19 +1413,21 @@ version = "0.4.0+0"

[[deps.Roots]]
deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"]
git-tree-sha1 = "ff42754a57bb0d6dcfe302fd0d4272853190421f"
git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e"
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
version = "2.0.19"
version = "2.0.20"

[deps.Roots.extensions]
RootsForwardDiffExt = "ForwardDiff"
RootsIntervalRootFindingExt = "IntervalRootFinding"
RootsSymPyExt = "SymPy"
RootsSymPyPythonCallExt = "SymPyPythonCall"

[deps.Roots.weakdeps]
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807"
SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6"
SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c"

[[deps.RuntimeGeneratedFunctions]]
deps = ["ExprTools", "SHA", "Serialization"]
Expand Down Expand Up @@ -1535,9 +1540,9 @@ version = "0.1.15"

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
git-tree-sha1 = "d5fb407ec3179063214bc6277712928ba78459e2"
git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.6.4"
version = "1.6.5"
weakdeps = ["Statistics"]

[deps.StaticArrays.extensions]
Expand Down Expand Up @@ -1567,9 +1572,9 @@ version = "1.7.0"

[[deps.StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4"
git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.34.0"
version = "0.34.2"

[[deps.StatsFuns]]
deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
Expand Down Expand Up @@ -1649,9 +1654,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[deps.Tracker]]
deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"]
git-tree-sha1 = "92364c27aa35c0ee36e6e010b704adaade6c409c"
git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd"
uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
version = "0.2.26"
version = "0.2.27"
weakdeps = ["PDMats"]

[deps.Tracker.extensions]
Expand Down Expand Up @@ -1796,9 +1801,9 @@ version = "1.6.1"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4"
git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.10.4+0"
version = "2.11.5+0"

[[deps.XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]
Expand Down
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