Update manifest files

TuringLang · Nov 11, 2023 · 78b9c79 · 78b9c79
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diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml
diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml
diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml
diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml
diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml
diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml
diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml
diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml
diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml
diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml
diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml
diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml
diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml
diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml
diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml
diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml
diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml
diff --git a/tutorials/docs-01-contributing-guide/Manifest.toml b/tutorials/docs-01-contributing-guide/Manifest.toml
diff --git a/tutorials/docs-02-contributing-style-guide/Manifest.toml b/tutorials/docs-02-contributing-style-guide/Manifest.toml
diff --git a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml
diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml
diff --git a/tutorials/docs-05-for-developers-compiler/Manifest.toml b/tutorials/docs-05-for-developers-compiler/Manifest.toml
diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml
diff --git a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml
diff --git a/tutorials/docs-08-using-turing/Manifest.toml b/tutorials/docs-08-using-turing/Manifest.toml
diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml
diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml
diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml
diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml
diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml
diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml
diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml
diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml
@@ -58,9 +58,9 @@ version = "0.1.33"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
+git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.6.2"
+version = "3.7.1"
 weakdeps = ["StaticArrays"]
 
     [deps.Adapt.extensions]
@@ -117,9 +117,9 @@ version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31"
+git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.4.11"
+version = "7.5.1"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
@@ -221,9 +221,9 @@ version = "0.5.1"
 
 [[deps.ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3"
+git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27"
 uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.55.0"
+version = "1.58.0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -367,15 +367,16 @@ deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
-deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7"
+deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
+git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.102"
-weakdeps = ["ChainRulesCore", "DensityInterface"]
+version = "0.25.103"
+weakdeps = ["ChainRulesCore", "DensityInterface", "Test"]
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
     DistributionsDensityInterfaceExt = "DensityInterface"
+    DistributionsTestExt = "Test"
 
 [[deps.DistributionsAD]]
 deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"]
@@ -414,9 +415,9 @@ version = "0.6.8"
 
 [[deps.DynamicPPL]]
 deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"]
-git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f"
+git-tree-sha1 = "50a718301941d4ec4f391aa845ee434fce2dbe2e"
 uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8"
-version = "0.23.19"
+version = "0.23.21"
 weakdeps = ["MCMCChains"]
 
     [deps.DynamicPPL.extensions]
@@ -575,9 +576,9 @@ version = "0.14.7"
 
 [[deps.IntervalSets]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6"
+git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.7.7"
+version = "0.7.8"
 weakdeps = ["Statistics"]
 
     [deps.IntervalSets.extensions]
@@ -617,9 +618,9 @@ version = "1.5.0"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27"
+git-tree-sha1 = "95063c5bc98ba0c47e75e05ae71f1fed4deac6f6"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.10"
+version = "0.9.12"
 
     [deps.KernelAbstractions.extensions]
     EnzymeExt = "EnzymeCore"
@@ -634,26 +635,32 @@ uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
 version = "0.6.7"
 
 [[deps.LLVM]]
-deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
-git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366"
+deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
+git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "6.3.0"
+version = "6.4.0"
+
+    [deps.LLVM.extensions]
+    BFloat16sExt = "BFloat16s"
+
+    [deps.LLVM.weakdeps]
+    BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"
 
 [[deps.LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2"
+git-tree-sha1 = "a84f8f1e8caaaa4e3b4c101306b9e801d3883ace"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.26+0"
+version = "0.0.27+0"
 
 [[deps.LRUCache]]
 git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db"
 uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637"
 version = "1.5.0"
 
 [[deps.LaTeXStrings]]
-git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
+git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
 uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
-version = "1.3.0"
+version = "1.3.1"
 
 [[deps.Lazy]]
 deps = ["MacroTools"]
@@ -764,15 +771,15 @@ version = "1.0.3"
 
 [[deps.MCMCChains]]
 deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"]
-git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b"
+git-tree-sha1 = "3b1ae6bcb0a94ed7760e72cd3524794f613658d2"
 uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
-version = "6.0.3"
+version = "6.0.4"
 
 [[deps.MCMCDiagnosticTools]]
 deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"]
-git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7"
+git-tree-sha1 = "6ea46c36b86320593d2017da3c28c79165167ef4"
 uuid = "be115224-59cd-429b-ad48-344e309966f0"
-version = "0.3.7"
+version = "0.3.8"
 
 [[deps.MKL_jll]]
 deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
@@ -912,9 +919,9 @@ version = "0.3.1"
 
 [[deps.Optimization]]
 deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"]
-git-tree-sha1 = "f59193f79f8310e5eaad309ccfa8f2fa06b6703b"
+git-tree-sha1 = "1aa7ffea6e171167e9cae620d749e16d5874414a"
 uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba"
-version = "3.19.1"
+version = "3.19.3"
 
     [deps.Optimization.extensions]
     OptimizationEnzymeExt = "Enzyme"
@@ -939,9 +946,9 @@ version = "3.19.1"
 
 [[deps.OptimizationOptimJL]]
 deps = ["Optim", "Optimization", "Reexport", "SparseArrays"]
-git-tree-sha1 = "d8a989697ad1037258238004306057ca866bc337"
+git-tree-sha1 = "fedb7064e737aefef3382f8bef3a4e464c7cb8eb"
 uuid = "36348300-93cb-4f02-beb5-3c3902f8871e"
-version = "0.1.12"
+version = "0.1.13"
 
 [[deps.OrderedCollections]]
 git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3"
@@ -950,9 +957,9 @@ version = "1.6.2"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198"
+git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.28"
+version = "0.11.29"
 
 [[deps.PSIS]]
 deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"]
@@ -968,9 +975,9 @@ version = "0.12.3"
 
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
-git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851"
+git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.7.2"
+version = "2.8.0"
 
 [[deps.Pathfinder]]
 deps = ["Accessors", "Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"]
@@ -1133,9 +1140,9 @@ version = "0.4.0+0"
 
 [[deps.Roots]]
 deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"]
-git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e"
+git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e"
 uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
-version = "2.0.20"
+version = "2.0.22"
 
     [deps.Roots.extensions]
     RootsForwardDiffExt = "ForwardDiff"
@@ -1173,9 +1180,9 @@ version = "1.98.1"
 
 [[deps.SciMLOperators]]
 deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"]
-git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b"
+git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d"
 uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
-version = "0.3.6"
+version = "0.3.7"
 
 [[deps.ScientificTypesBase]]
 git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b"
@@ -1184,9 +1191,9 @@ version = "3.0.0"
 
 [[deps.SentinelArrays]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39"
+git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f"
 uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.4.0"
+version = "1.4.1"
 
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@@ -1330,9 +1337,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -1357,19 +1364,19 @@ version = "0.1.0"
 
 [[deps.Tracker]]
 deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"]
-git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd"
+git-tree-sha1 = "4e35f86bcdcdc2f104f763750d6038dc35e598bc"
 uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
-version = "0.2.27"
+version = "0.2.28"
 weakdeps = ["PDMats"]
 
     [deps.Tracker.extensions]
     TrackerPDMatsExt = "PDMats"
 
 [[deps.Transducers]]
 deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
-git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5"
+git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141"
 uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999"
-version = "0.4.78"
+version = "0.4.79"
 
     [deps.Transducers.extensions]
     TransducersBlockArraysExt = "BlockArrays"
@@ -1446,9 +1453,9 @@ version = "1.2.13+0"
 
 [[deps.ZygoteRules]]
 deps = ["ChainRulesCore", "MacroTools"]
-git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d"
+git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184"
 uuid = "700de1a5-db45-46bc-99cf-38207098b444"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl"]