Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Are we correctly determining the type for PubChem identifiers that don't have one? #401

Open
gaurav opened this issue Jan 21, 2025 · 0 comments
Assignees

Comments

@gaurav
Copy link
Collaborator

gaurav commented Jan 21, 2025

This is what it looks like:

WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'INCHIKEY:RZMRFCJPIQIEDN-UHFFFAOYSA-N', 'PUBCHEM.COMPOUND:53155601'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'PUBCHEM.COMPOUND:72098296', 'INCHIKEY:FSOLUEBWUILIRS-UHFFFAOYSA-N'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'INCHIKEY:MYUAMEOMSRFAGG-UHFFFAOYSA-N', 'PUBCHEM.COMPOUND:46122610'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'PUBCHEM.COMPOUND:169495664', 'INCHIKEY:XSDQTPRQMTZCFV-UHFFFAOYSA-N'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'PUBCHEM.COMPOUND:72095553', 'INCHIKEY:QOCOCMKIRIRBKR-UHFFFAOYSA-N'}) (0): set()
INFO:root:Found a clique that that contains PUBCHEM types ({'biolink:SmallMolecule', 'biolink:MolecularMixture'}). This clique will be split into a biolink:MolecularMixture ({'PUBCHEM.COMPOUND:16132418'}) and a biolink:SmallMolecule ({'UMLS:C0123677', 'CHEMBL.COMPOUND:CHEMBL1201496', 'MESH:D061267', 'UNII:D933668QVX', 'UMLS:C1708521', 'CHEMBL.COMPOUND:CHEMBL1201664', 'PUBCHEM.COMPOUND:118984445', 'RXCUI:51428', 'DrugCentral:4981', 'DRUGBANK:DB01306'})
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'PUBCHEM.COMPOUND:130119213', 'INCHIKEY:BVIQKPPQESUAGO-UHFFFAOYSA-N'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'PUBCHEM.COMPOUND:72150318', 'INCHIKEY:OSXLHLYJBXYWDL-UHFFFAOYSA-N'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'PUBCHEM.COMPOUND:71964104', 'INCHIKEY:IYFBLMBSWRSJAH-MYKRZTLLSA-N'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'INCHIKEY:AREDJLUKVVGUPI-AQOPNEMVSA-N', 'PUBCHEM.COMPOUND:156617184'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'PUBCHEM.COMPOUND:75087427', 'INCHIKEY:NQFZSDSFBPGWBZ-UHFFFAOYSA-N'}) (0): set()
WARNING:root:An unexpected number of PUBCHEM types found for frozenset({'INCHIKEY:QVALUQYMMKBUTI-UHFFFAOYSA-N', 'PUBCHEM.COMPOUND:46152111'}) (0): set()
@gaurav gaurav self-assigned this Jan 21, 2025
@gaurav gaurav added this to the Issues needing investigation milestone Jan 30, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant