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lines changed Original file line number Diff line number Diff line change @@ -458,7 +458,7 @@ void Globals::print_usage() const
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printf (" \n Variant Filtering/Selection:\n " );
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printf (" -f, --filter <STRING1,STRING2...> [ALL]\n " );
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- printf (" select just variants passing these FILTERs (OR operation)\n " );
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+ printf (" select just variants with these FILTER values (OR operation)\n " );
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printf (" -l, --largest-variant <INTEGER> [%d]\n " , g.max_size );
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printf (" maximum variant size, larger variants ignored\n " );
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printf (" -sv, --sv-threshold <INTEGER> [%d]\n " , g.sv_threshold );
Original file line number Diff line number Diff line change @@ -688,7 +688,7 @@ variantData::variantData(std::string vcf_fn,
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}
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}
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- // if so, save this filter's index
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+ // if so, save this filter's index (to compare against for variants)
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if (filter_idx >= 0 ) {
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for (int j = 0 ; j < hdr->hrec [i]->nkeys ; j++) {
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if (std::string (hdr->hrec [i]->keys [j]) == std::string (" IDX" )) {
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