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@Strong-Lab

Strong Lab, National Jewish Health, University of Colorado, Denver

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  1. VirKraken VirKraken Public

    Kraken extension to identify viral contigs

    Python 10 1

  2. VirBrant VirBrant Public

    Jupyter Notebook 3 2

  3. Phybrid Phybrid Public

    A hybrid gene content and k-mer feature viral metagenomic contig identifier

    Jupyter Notebook 3 1

  4. Prophage_in_NTM Prophage_in_NTM Public

    This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

    Jupyter Notebook 1

  5. Viral_Classification_in_Metagenomics Viral_Classification_in_Metagenomics Public

    This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools

    Jupyter Notebook 1 1

  6. public public Public

Repositories

Showing 10 of 11 repositories
  • extract_sequence_range Public Forked from jrhendrix/xRange

    A script that provides several options for extracting a range of characters from a FASTA file

    Python 0 1 0 0 Updated May 18, 2022
  • Viral_Classification_in_Metagenomics Public

    This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools

    Jupyter Notebook 1 MIT 1 0 0 Updated Dec 7, 2021
  • GISAID_Pipeline_Functions Public Forked from wish1832/GISAID_Pipeline_Functions

    Scripts used to determine variants in SARS-CoV-2 Sequences from the Global Sharing of All Influenza Data (GISAID) database.

    Python 0 1 0 0 Updated Nov 21, 2021
  • Phybrid Public

    A hybrid gene content and k-mer feature viral metagenomic contig identifier

    Jupyter Notebook 3 MIT 1 0 0 Updated Jun 3, 2021
  • Prophage_in_NTM Public

    This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 16, 2020
  • VirBrant Public
    Jupyter Notebook 3 MIT 2 0 0 Updated Dec 12, 2020
  • VirKraken Public

    Kraken extension to identify viral contigs

    Python 10 MIT 1 2 0 Updated Dec 4, 2020
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 0 3,432 0 0 Updated Sep 30, 2020
  • wiki Public

    How to's

    0 0 0 0 Updated May 29, 2020
  • NTM_Soil Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 6, 2020
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