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threejs-atlas-viewer

This repository hosts the files for an atlas viewer application.

This is not a standalone application. You need to provide an atlas structure JSON file in the config.js file. To achieve that you can first run the mrmlToJson script which you will find here.

If you are using any of these repositories :

###Demos ####Lastest https://stity.github.io/spl-brain-atlas/utils/three ####Stable https://stity.github.io/atlas-releases/

###To install the viewer locally :

  • go in atlas repository
  • add this repository as submodule with git submodule add https://github.com/stity/threejs-atlas-viewer <path-to-submodule-directory>
  • run bower install in the new directory
  • copy configAtlasViewer.js in the parent directory of the submodule (it allows git to commit the changes you make to this config file)
  • fill configAtlasViewer.js with your own parameters
  • run a server at the root of your initial repository.If can use http-server NPM package :
    • npm install -g http-server
    • http-server
  • now you can open your browser and enjoy the viewer (if you used http-server command, the URL will be http://localhost:8080/path-to-submodule)

###To build the release files (dist directory) :

  • run npm install -g gulp-cli to install gulp
  • run npm install --dev to install the dev dependencies
  • run gulp or npm build

###Working with service workers : A Service Worker is registred to enhance user experience by providing offline support but as it uses cache for everything, you will need to follow these steps (with Google Chrome) in case you change your local files.

  • open developer tools
  • check that the checkbox "disable cache" in the network panel is checked
  • long push on the refresh button
  • "Empty Cache and Hard Reload"

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WebGL-based anatomy atlas browser

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  • JavaScript 95.6%
  • HTML 3.7%
  • CSS 0.7%