Code and analyses for:
Mead, B.E., Hattori, K., Levy, L. et al. Screening for modulators of the cellular composition of gut epithelia via organoid models of intestinal stem cell differentiation. Nat. Biomed. Eng 6, 476–494 (2022). https://doi.org/10.1038/s41551-022-00863-9
Includes analysis pipeline for Primary and Secondary screening, and single-cell RNA-seq analysis scripts for processed DGEs (data available at Broad Institute single cell portal)