Below, you will find the links to the lectures and Google Colab notebooks for the practical modules.
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Day 1 - morning: Lecture Module 1: Pre-processing.
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Day 1 - afternoon: First half of Notebook A - Quality control, normalization, and annotation & Lecture Module 2: Quality control and normalization.
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Day 2 - morning: Second half of Notebook A - Quality control, normalization, and annotation & Lecture Module 3: Cell annotation.
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Day 2 - afternoon: Notebook B - Integrating single-cell transcriptomes from multiple samples & Lecture Module 4: Batch Correction and Data Integration.
- Day 3 - morning: Notebook C - Immune receptor profiling & Lecture Module 5: Immune receptor profiling.
The skeleton notebooks for the projects can be found here:
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