The Algorithm implemented in BiVeS was published as
Martin Scharm, Olaf Wolkenhauer, Dagmar Waltemath: An algorithm to detect and communicate the differences in computational models describing biological systems. Bioinformatics 32 (4): 563-570;
This library facilitates BiVeS integration into Java based projects: You can use it to communicate with the BiVeS WebApp. Thus, you can easily compare computational models! More documentation on the BiVeS-WebApp-Client can be found and the GitHub pages of the SEMS project.
BiVeS itself consists of a number of modules:
- xmlutils is a library for advanced XML handling
- jCOMODI provides programmatic access to the COMODI ontology
- BiVeS-Core is the core library for comparison of computational models
- BiVeS-SBML is a module providing special strategies for models encoded in SBML
- BiVeS-CellML is a module providing special strategies for models encoded in CellML
- BiVeS ties all modules together and provides command line access
- BiVeS-WebApp is a web interface to access BiVeS through the network
- BiVeS-WebApp-Client provides a Java library for comparing models using the BiVeS-WebApp
Artwork and text etc is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License
The code is licensed under an Apache 2.0 license:
Copyright martin scharm <https://binfalse.de/contact/>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
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