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AG-1196: Sort gene_info.biodomains to generate consistent ordering #86

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Aug 18, 2023
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AG-1196: Sort gene_info.biodomains to generate consistent ordering #86

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4 changes: 3 additions & 1 deletion src/agoradatatools/etl/transform/gene_info.py
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Original file line number Diff line number Diff line change
Expand Up @@ -80,6 +80,9 @@ def transform_gene_info(
.rename(columns={"biodomain": "biodomains"})
)

# sort biodomains list alphabetically
biodomains['biodomains'] = biodomains['biodomains'].apply(sorted)

# For genes with either is_adi or is_tep set to True, create a resource URL that opens
# the portal page to the specific gene. This must be done using the hgnc_symbol from the
# tep_info file and not the symbol in gene_info, because there are some mismatches
Expand All @@ -95,7 +98,6 @@ def transform_gene_info(
)

# Merge all the datasets

gene_info = gene_metadata

for dataset in [
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