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config.md

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34 lines (34 loc) · 3.67 KB
kit_type stain_type run_chip_detect run_quality_control run_tissue_segmentation run_cell_segmentation correct_radius channel_align run_qc run_alignment run_matrix_extract run_report run_annotation
Stereo-seq T FF DAPI True False True True 10 -1 True True False False False
Stereo-seq T FF Transcriptomics False False True False 0 -1 True True False False False
Stereo-seq T FF IF False False True False 0 0 True True False False False
Stereo-seq T FF HE True False True True 10 -1 True True False False False
Stereo-seq T FF ssDNA True False True True 10 -1 True True False False False
Stereo-CITE T FF DAPI True False True True 10 -1 True True False False False
Stereo-CITE T FF Transcriptomics False False True False 0 -1 True True False False False
Stereo-CITE T FF IF False False True False 0 0 True True False False False
Stereo-CITE T FF HE True False True True 10 -1 True True False False False
Stereo-CITE T FF ssDNA True False True True 10 -1 True True False False False
Stereo-CITE T FF Protein False False True False 0 -1 True True False False False
Stereo-seq N FFPE DAPI True False True True 10 -1 True True False False False
Stereo-seq N FFPE Transcriptomics False False True False 0 -1 True True False False False
Stereo-seq N FFPE IF False False True False 0 0 True True False False False
Stereo-seq N FFPE HE True False True False 10 -1 True True False False False
Stereo-seq N FFPE ssDNA True False True True 10 -1 True True False False False
Stereo-seq T FF R DAPI True False True True 10 -1 True True True False False
Stereo-seq T FF R Transcriptomics False False True False 0 -1 True True True False False
Stereo-seq T FF R IF False False True False 0 0 True True True False False
Stereo-seq T FF R HE True False True True 10 -1 True True True False False
Stereo-seq T FF R ssDNA True False True True 10 -1 True True True False False
Stereo-CITE T FF R DAPI True True True True 10 -1 True True True False False
Stereo-CITE T FF R Transcriptomics False False True False 0 -1 True True True False False
Stereo-CITE T FF R IF False False True True 0 0 True True True False False
Stereo-CITE T FF R HE True False True True 10 -1 True True True False False
Stereo-CITE T FF R ssDNA True True True True 10 -1 True True True False False
Stereo-CITE T FF R Protein False False True False 0 -1 True True True False False
Stereo-seq N FFPE R DAPI True False True True 10 -1 True True True False False
Stereo-seq N FFPE R Transcriptomics False False True False 0 -1 True True True False False
Stereo-seq N FFPE R IF False False True False 0 0 True True True False False
Stereo-seq N FFPE R HE True False True False 10 -1 True True True False False
Stereo-seq N FFPE R ssDNA True False True True 10 -1 True True True False False