kit_type | stain_type | run_chip_detect | run_quality_control | run_tissue_segmentation | run_cell_segmentation | correct_radius | channel_align | run_qc | run_alignment | run_matrix_extract | run_report | run_annotation |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Stereo-seq T FF | DAPI | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-seq T FF | Transcriptomics | False | False | True | False | 0 | -1 | True | True | False | False | False |
Stereo-seq T FF | IF | False | False | True | False | 0 | 0 | True | True | False | False | False |
Stereo-seq T FF | HE | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-seq T FF | ssDNA | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-CITE T FF | DAPI | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-CITE T FF | Transcriptomics | False | False | True | False | 0 | -1 | True | True | False | False | False |
Stereo-CITE T FF | IF | False | False | True | False | 0 | 0 | True | True | False | False | False |
Stereo-CITE T FF | HE | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-CITE T FF | ssDNA | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-CITE T FF | Protein | False | False | True | False | 0 | -1 | True | True | False | False | False |
Stereo-seq N FFPE | DAPI | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-seq N FFPE | Transcriptomics | False | False | True | False | 0 | -1 | True | True | False | False | False |
Stereo-seq N FFPE | IF | False | False | True | False | 0 | 0 | True | True | False | False | False |
Stereo-seq N FFPE | HE | True | False | True | False | 10 | -1 | True | True | False | False | False |
Stereo-seq N FFPE | ssDNA | True | False | True | True | 10 | -1 | True | True | False | False | False |
Stereo-seq T FF R | DAPI | True | False | True | True | 10 | -1 | True | True | True | False | False |
Stereo-seq T FF R | Transcriptomics | False | False | True | False | 0 | -1 | True | True | True | False | False |
Stereo-seq T FF R | IF | False | False | True | False | 0 | 0 | True | True | True | False | False |
Stereo-seq T FF R | HE | True | False | True | True | 10 | -1 | True | True | True | False | False |
Stereo-seq T FF R | ssDNA | True | False | True | True | 10 | -1 | True | True | True | False | False |
Stereo-CITE T FF R | DAPI | True | True | True | True | 10 | -1 | True | True | True | False | False |
Stereo-CITE T FF R | Transcriptomics | False | False | True | False | 0 | -1 | True | True | True | False | False |
Stereo-CITE T FF R | IF | False | False | True | True | 0 | 0 | True | True | True | False | False |
Stereo-CITE T FF R | HE | True | False | True | True | 10 | -1 | True | True | True | False | False |
Stereo-CITE T FF R | ssDNA | True | True | True | True | 10 | -1 | True | True | True | False | False |
Stereo-CITE T FF R | Protein | False | False | True | False | 0 | -1 | True | True | True | False | False |
Stereo-seq N FFPE R | DAPI | True | False | True | True | 10 | -1 | True | True | True | False | False |
Stereo-seq N FFPE R | Transcriptomics | False | False | True | False | 0 | -1 | True | True | True | False | False |
Stereo-seq N FFPE R | IF | False | False | True | False | 0 | 0 | True | True | True | False | False |
Stereo-seq N FFPE R | HE | True | False | True | False | 10 | -1 | True | True | True | False | False |
Stereo-seq N FFPE R | ssDNA | True | False | True | True | 10 | -1 | True | True | True | False | False |