How to save the result with annotation and co-occurance? how to subset and establish the certain group?

[jiangli2941]

1. How to save the result with annotation and co-occurance? I used the following code but failed.
   
   

2.how to subset and establish the certain group?
Here is the format of my integrated data.

I used this code to subgroup:

print(ms_data_5) was like this:

however, if i want to extract the established subgroup, the code failed.

######datasubset = ms_data.tl.filter_by_clusters(cluster_res_key='leiden', obs=['control'], excluded=False, inplace=False)

Hope to get guidance,
Best

[tanliwei-coder]

About your second problem, the parameter used to specify what groups will be filtered is groups not obs, api is here.

[tanliwei-coder]

Before saving, what analysis did you do? Could you show me your codes? And which version of stereopy were you using?