update requiments.txt(0.4.0)

Author: junhouhuiBGI

docs/requirements.txt

@@ -43,13 +43,13 @@ flatbuffers==2.0
 fonttools==4.28.5
 fsspec==2022.1.0
 gast==0.4.0
-gefpy>=0.5.5
+gefpy>=0.5.6
 glog==0.3.1
 google-auth==2.3.3
 google-auth-oauthlib==0.4.6
 google-pasta==0.2.0
 grpcio==1.43.0
-h5py==3.6.0
+h5py==3.7.0
 HeapDict==1.0.1
 holoviews==1.14.5
 hotspot @ git+https://github.com/yoseflab/Hotspot.git@45555a0feb6cc46cb52aa09230f0ed801559bb87
@@ -112,7 +112,7 @@ oauthlib==3.1.1
 omnipath==1.0.5
 opencv-python==4.5.5.64
 opt-einsum==3.3.0
-packaging==20.9
+packaging==21.3
 pandas==1.3.4
 pandocfilters==1.5.0
 panel==0.12.1
@@ -123,7 +123,7 @@ patsy==0.5.2
 pexpect==4.8.0
 PhenoGraph==1.5.7
 pickleshare==0.7.5
-Pillow==8.4.0
+Pillow==9.2.0
 PIMS==0.5
 pkginfo==1.8.2
 prometheus-client==0.12.0
@@ -210,7 +210,7 @@ tornado==6.1
 tqdm==4.60.0
 traitlets==4.3.3
 twine==3.7.1
-typing-extensions==3.7.4.3
+typing-extensions==4.3.0
 umap-learn==0.5.1
 urllib3==1.26.9
 wcwidth==0.2.5
@@ -224,4 +224,7 @@ zarr==2.11.0a2
 zict==2.0.0
 zipp==3.7.0
 setuptools>=41.0.0,<=61.2.0
-hotspotsc==0.9.1
+hotspotsc==0.9.1
+keras==2.7.0
+pyarrow==8.0.0
+tables==3.7.0

requirements.txt

@@ -6,7 +6,7 @@ matplotlib>=3.4.2,<=3.5.2
 pandas==1.3.4
 scipy==1.7.3
 seaborn~=0.11.1
-h5py>=3.2.1,<=3.6.0
+h5py>=3.2.1,<=3.7.0
 gefpy>=0.5.6
 setuptools>=41.0.0,<=61.2.0
 numba~=0.53.1
@@ -16,7 +16,7 @@ umap-learn==0.5.1
 KDEpy==1.1.0
 Jinja2==3.0.3
 shapely~=1.7.1
-packaging==20.9
+packaging==21.3
 panel==0.12.1
 holoviews==1.14.5
 param==1.11.1
@@ -27,7 +27,7 @@ anndata~=0.7.6
 phenograph==1.5.7
 requests~=2.26.0
 urllib3==1.26.9
-typing-extensions==3.7.4.3
+typing-extensions==4.3.0
 natsort~=7.1.1
 joblib~=1.0.1
 patsy~=0.5.1
@@ -44,7 +44,7 @@ slideio==0.5.225
 torchvision==0.11.1
 tqdm==4.60.0
 scikit-learn==1.0.1
-pillow==8.4.0
+pillow==9.2.0
 #opencv-python==4.5.1.48
 scikit-image==0.19.0
 tifffile==2021.11.2
@@ -58,4 +58,3 @@ distributed==2022.2.0
 keras==2.7.0
 pyarrow==8.0.0
 tables==3.7.0
-rich