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[FEATURE,TEST] Add IonMobilityBinner and FeatureFinderIonMobility #6

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[FEATURE,TEST] Add IonMobilityBinner and FeatureFinderIonMobility #6

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2 changes: 2 additions & 0 deletions src/openms/source/APPLICATIONS/ToolHandler.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -61,6 +61,7 @@ namespace OpenMS
tools_map["FalseDiscoveryRate"] = Internal::ToolDescription("FalseDiscoveryRate", "ID Processing");
tools_map["FeatureFinderCentroided"] = Internal::ToolDescription("FeatureFinderCentroided", "Quantitation");
tools_map["FeatureFinderIdentification"] = Internal::ToolDescription("FeatureFinderIdentification", "Quantitation");
tools_map["FeatureFinderIonMobility"] = Internal::ToolDescription("FeatureFinderIonMobility", "Quantitation");
tools_map["FeatureFinderIsotopeWavelet"] = Internal::ToolDescription("FeatureFinderIsotopeWavelet", "Quantitation");
tools_map["FeatureFinderMetabo"] = Internal::ToolDescription("FeatureFinderMetabo", "Quantitation");
tools_map["FeatureFinderMultiplex"] = Internal::ToolDescription("FeatureFinderMultiplex", "Quantitation");
Expand All @@ -84,6 +85,7 @@ namespace OpenMS
tools_map["IDPosteriorErrorProbability"] = Internal::ToolDescription("IDPosteriorErrorProbability", "ID Processing");
tools_map["IDRipper"] = Internal::ToolDescription("IDRipper", "File Handling");
tools_map["IDRTCalibration"] = Internal::ToolDescription("IDRTCalibration", "ID Processing");
tools_map["IonMobilityBinner"] = Internal::ToolDescription("IonMobilityBinner", "File Handling");
tools_map["IsobaricAnalyzer"] = Internal::ToolDescription("IsobaricAnalyzer", "Quantitation");
tools_map["InclusionExclusionListCreator"] = Internal::ToolDescription("InclusionExclusionListCreator", "Targeted Experiments");
tools_map["InternalCalibration"] = Internal::ToolDescription("InternalCalibration", "Signal processing and preprocessing");
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18 changes: 18 additions & 0 deletions src/tests/topp/CMakeLists.txt
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Expand Up @@ -257,6 +257,24 @@ add_test("TOPP_MassTraceExtractor_2" ${TOPP_BIN_PATH}/MassTraceExtractor -test -
add_test("TOPP_MassTraceExtractor_2_out" ${DIFF} -whitelist "id=" -in1 MassTraceExtractor_2.tmp -in2 ${DATA_DIR_TOPP}/MassTraceExtractor_2_output.featureXML )
set_tests_properties("TOPP_MassTraceExtractor_2_out" PROPERTIES DEPENDS "TOPP_MassTraceExtractor_2")

#------------------------------------------------------------------------------
# IonMobilityBinner test
add_test("TOPP_IonMobilityBinner_1" ${TOPP_BIN_PATH}/IonMobilityBinner -test -in ${DATA_DIR_TOPP}/IonMobilityBinner_1_input.mzML -out_prefix IonMobilityBinner_1_output -num_bins 3 -use_offset)
add_test("TOPP_IonMobilityBinner_1_out1" ${DIFF} -in1 IonMobilityBinner_1_output-1-1.mzML -in2 ${DATA_DIR_TOPP}/IonMobilityBinner_1_output1.mzML)
set_tests_properties("TOPP_IonMobilityBinner_1_out1" PROPERTIES DEPENDS "TOPP_IonMobilityBinner_1")
add_test("TOPP_IonMobilityBinner_1_out2" ${DIFF} -in1 IonMobilityBinner_1_output-1-2.mzML -in2 ${DATA_DIR_TOPP}/IonMobilityBinner_1_output2.mzML)
set_tests_properties("TOPP_IonMobilityBinner_1_out2" PROPERTIES DEPENDS "TOPP_IonMobilityBinner_1")
add_test("TOPP_IonMobilityBinner_1_out3" ${DIFF} -in1 IonMobilityBinner_1_output-1-3.mzML -in2 ${DATA_DIR_TOPP}/IonMobilityBinner_1_output3.mzML)
set_tests_properties("TOPP_IonMobilityBinner_1_out3" PROPERTIES DEPENDS "TOPP_IonMobilityBinner_1")
add_test("TOPP_IonMobilityBinner_1_out4" ${DIFF} -in1 IonMobilityBinner_1_output-2-1.mzML -in2 ${DATA_DIR_TOPP}/IonMobilityBinner_1_output4.mzML)
set_tests_properties("TOPP_IonMobilityBinner_1_out4" PROPERTIES DEPENDS "TOPP_IonMobilityBinner_1")
add_test("TOPP_IonMobilityBinner_1_out5" ${DIFF} -in1 IonMobilityBinner_1_output-2-2.mzML -in2 ${DATA_DIR_TOPP}/IonMobilityBinner_1_output5.mzML)
set_tests_properties("TOPP_IonMobilityBinner_1_out5" PROPERTIES DEPENDS "TOPP_IonMobilityBinner_1")
add_test("TOPP_IonMobilityBinner_1_out6" ${DIFF} -in1 IonMobilityBinner_1_output-2-3.mzML -in2 ${DATA_DIR_TOPP}/IonMobilityBinner_1_output6.mzML)
set_tests_properties("TOPP_IonMobilityBinner_1_out6" PROPERTIES DEPENDS "TOPP_IonMobilityBinner_1")
add_test("TOPP_IonMobilityBinner_1_out7" ${DIFF} -in1 IonMobilityBinner_1_output-2-4.mzML -in2 ${DATA_DIR_TOPP}/IonMobilityBinner_1_output7.mzML)
set_tests_properties("TOPP_IonMobilityBinner_1_out7" PROPERTIES DEPENDS "TOPP_IonMobilityBinner_1")

#------------------------------------------------------------------------------
# FeatureFinderMetabo test
add_test("TOPP_FeatureFinderMetabo_1" ${TOPP_BIN_PATH}/FeatureFinderMetabo -test -ini ${DATA_DIR_TOPP}/FeatureFinderMetabo.ini -in ${DATA_DIR_TOPP}/FeatureFinderMetabo_1_input.mzML -out FeatureFinderMetabo_1.tmp)
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595 changes: 595 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_input.mzML
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360 changes: 360 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_output1.mzML
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360 changes: 360 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_output2.mzML
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360 changes: 360 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_output3.mzML
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360 changes: 360 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_output4.mzML
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360 changes: 360 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_output5.mzML
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360 changes: 360 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_output6.mzML
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360 changes: 360 additions & 0 deletions src/tests/topp/IonMobilityBinner_1_output7.mzML
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