Merge JSON Lines code #342

ecwood · 2023-08-03T20:24:14Z

#321

…here's definitely redundancy in this script

…one - there's definitely redundancy in this script

…nthrough

ecwood added 30 commits July 18, 2023 14:44

#321 kg2_util updates for jsonlines

a050a6c

#321 drugbank updates for jsonlines

699c202

#321 cleanup to Snakefile so I can push drugbank changes for CI

ab8ad18

#321 updates to GO Annotations conversion for jsonlines

265c60c

#321 HMDB update for JSON Lines

6570abf

#321 assorted JSON Lines update cleanups

179bfb5

#321 SMPDB to JSON Lines (though might want to return to this one - t…

b29c57b

…here's definitely redundancy in this script

#321 more assorted JSON Lines cleanups

6ae1012

#321 actual SMPDB to JSON Lines (though might want to return to this …

1e20aab

…one - there's definitely redundancy in this script

#321 KEGG to JSON Lines

0c41e15

#321 DrugCentral to JSON Lines format

69dd07d

#321 Ensembl to JSON Lines format

b8f5414

#321 more assorted updates from working on JSON Lines

51d36af

#321 DisGenET to JSON Lines

928e6e3

#321 correcting ordering issue

6cb0ae0

#321 IntAct to JSON Lines

c083301

#321 DGIdb to JSON Lines update

754fad1

#321 JensenLab to JSON Lines update

5e5fbf3

#321 multi ont to JSON Lines update

7df05e3

#321 cleaning up multi ont header with JSON lines update

7421b43

#321 NCBIGene to JSON Lines update

e14bf67

#321 Reactome to JSON Lines update

dc7f7be

#321 RepoDB to JSON Lines update

0893acd

#321 SemMedDB to JSON Lines update

09c8375

#321 UniChem to JSON Lines update

2a4cd2f

#321 UniProtKB to JSON Lines update

5f54a33

#321 mirbase to JSON Lines update

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#321 attempt at updating report script - will likely fail

ab8ce23

#321 update github actions to have right inputs

598c480

#321 correctly access nodes in report script

2902afa

ecwood added 28 commits July 31, 2023 15:00

#321 documentation of comments involved in SemMedDB update

4c12917

#321 additional documentation

cfc3491

#321 more documentation

c472d28

#321 instance tracker information

1fc78b0

#321 binary logging documentation

8bda0cc

#321 add in build information for all the way through JSON Lines build

a92f859

#321 updated entire table with times from complete, without breaks ru…

78e156c

…nthrough

#321 try to figure out why ci builds keep failing

4561364

#321 try to figure out why ci builds keep failing 2

8888a26

#321 adding more times in from KG2.8.4 build

3ef6634

#321 start adding memory content into the documentation

b783b0a

#341 attempt to see the problem

b9c922d

#341 adding another acceptable filename

29467a9

#341 putting log file back in place

caa5a83

Merge branch 'master' of github.com:RTXteam/RTX-KG2 into jsonlines

a663aba

#267 needs an exception in validator

852f6e6

#321 more times in documentation

e0bee54

#339 actually a qualifiers dictionary

e1548d3

#321 diff log

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#321 this should correct categorization issue with nodes

51d5751

#321 more documentation with KG2.8.4 build log files added

859a483

#321 removing the DrugBank log spam

d03d8ca

#321 diff file updated after 51d5751

26f8d5f

#321 hopefully this addresses the predicate type issue

5f056f4

#321 actually this one for the predicate type issue

2cad675

#321 update log post commit 2cad675

c9367a8

#321 build info in report script needs correct getters

f6e1d05

#321 don't include build node in stats

e831c1e

ecwood self-assigned this Aug 3, 2023

ecwood merged commit 545934d into master Aug 3, 2023
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Merge JSON Lines code #342

Merge JSON Lines code #342

ecwood commented Aug 3, 2023

Merge JSON Lines code #342

Merge JSON Lines code #342

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ecwood commented Aug 3, 2023