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Correcting issue per CI
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ecwood committed Aug 16, 2023
1 parent f84d38c commit 007352b
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions extract-mirbase.sh
Original file line number Diff line number Diff line change
Expand Up @@ -23,8 +23,8 @@ output_file=${1:-"${BUILD_DIR}/miRNA.dat"}

mkdir -p ${output_dir}

${curl_get} https://www.mirbase.org/download_file/miRNA.dat/ > /tmp/miRNA.dat
${curl_get} https://www.mirbase.org/download_readme/ > ${output_dir}/miRBase_README.txt
${curl_get} https://mirbase.org/download/miRNA.dat/ > /tmp/miRNA.dat
${curl_get} https://mirbase.org/download/README/ > ${output_dir}/miRBase_README.txt

sed -i "s/<br>//" ${output_dir}/miRBase_README.txt
version_number=`grep -m 1 "The miRBase Sequence Database -- Release" ${output_dir}/miRBase_README.txt | cut -f7 -d ' '`
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