Update/pyo3 (#1847)

* update to new pyo3 compiles

* disk graph also compiles

* tidy

* clean up warnings

* point kdam at PR for now

* rebase fixes

* tidy

* fix test comment

* update latest python version to 3.13

* update pyarrow requirement and drop python 3.8

* fix for numpy >= 2.0

* fix arrow version mismatch

* deactivate storage

* downgrade sql_parser

* fix cypher

* update kdam and fix some deprecation warnings

* add back the default features

.github/workflows/_release_python.yml

@@ -27,7 +27,7 @@ jobs:
       - name: Install Protoc
         uses: arduino/setup-protoc@v3
         with:
-          repo-token: ${{ secrets.GITHUB_TOKEN }}        
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
       - name: Set up cargo cache
         uses: actions/cache@v3
         continue-on-error: false
@@ -45,18 +45,18 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version: |
-            3.8
             3.9
             3.10
             3.11
             3.12
+            3.13
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
           working-directory: ./python
           command: build
           target: ${{ matrix.target }}
-          args: --release --out dist -i python3.8 -i python3.9 -i python3.10 -i python3.11 -i python3.12
+          args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12 -i python3.13
           manylinux: 2_28
           before-script-linux: |
             if [[ -f /etc/os-release ]]; then
@@ -137,26 +137,26 @@ jobs:
       - name: Install Protoc
         uses: arduino/setup-protoc@v3
         with:
-          repo-token: ${{ secrets.GITHUB_TOKEN }}        
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
       - uses: actions/checkout@v3
         with:
           ref: ${{ inputs.base }}
       - uses: actions/setup-python@v4
         with:
           python-version: |
-            3.8
             3.9
             3.10
             3.11
             3.12
+            3.13
           architecture: ${{ matrix.target }}
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
           working-directory: ./python
           command: build
           target: ${{ matrix.target }}
-          args: --release --out dist -i python3.8 -i python3.9 -i python3.10 -i python3.11 -i python3.12
+          args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12 -i python3.13
       - name: Upload wheels to gh artifact
         uses: actions/upload-artifact@v3
         with:
@@ -177,7 +177,7 @@ jobs:
       - name: Install Protoc
         uses: arduino/setup-protoc@v3
         with:
-          repo-token: ${{ secrets.GITHUB_TOKEN }}        
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
       - name: Set up cargo cache
         uses: actions/cache@v3
         continue-on-error: false
@@ -195,18 +195,18 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version: |
-            3.8
             3.9
             3.10
             3.11
             3.12
+            3.13
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
           working-directory: ./python
           command: build
           target: ${{ matrix.target }}
-          args: --release --out dist -i python3.8 -i python3.9 -i python3.10 -i python3.11 -i python3.12
+          args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12 -i python3.13
       - name: Upload wheels to gh artifact
         uses: actions/upload-artifact@v3
         with:

.github/workflows/test_python_workflow.yml

@@ -19,7 +19,7 @@ jobs:
     steps:
       - id: set-matrix
         run: |
-          echo "python-versions=[\"3.8\",\"3.12\"]" >> $GITHUB_OUTPUT
+          echo "python-versions=[\"3.9\",\"3.13\"]" >> $GITHUB_OUTPUT
   python-test:
     if: ${{ !inputs.skip_tests }}
     name: Python Tests